Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b09f
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL121993-4|CAI22739.1|  943|Homo sapiens WD repeat domain 3 prot...    29   9.7  
AF083217-1|AAD45865.1|  943|Homo sapiens WD repeat protein WDR3 ...    29   9.7  
AB209201-1|BAD92438.1|  466|Homo sapiens WD repeat-containing pr...    29   9.7  

>AL121993-4|CAI22739.1|  943|Homo sapiens WD repeat domain 3
           protein.
          Length = 943

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -1

Query: 326 FFVKDREFQILGKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 147
           FF   ++ +I   ++D   H +   G H  +  LA   V   GD+VV S     + + E+
Sbjct: 648 FFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLA---VSPSGDYVVSSSHDKSLRLWER 704

Query: 146 RQNLLLLFDERSVNR 102
            +  L+L +ER + R
Sbjct: 705 TREPLILEEEREMER 719


>AF083217-1|AAD45865.1|  943|Homo sapiens WD repeat protein WDR3
           protein.
          Length = 943

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -1

Query: 326 FFVKDREFQILGKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 147
           FF   ++ +I   ++D   H +   G H  +  LA   V   GD+VV S     + + E+
Sbjct: 648 FFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLA---VSPSGDYVVSSSHDKSLRLWER 704

Query: 146 RQNLLLLFDERSVNR 102
            +  L+L +ER + R
Sbjct: 705 TREPLILEEEREMER 719


>AB209201-1|BAD92438.1|  466|Homo sapiens WD repeat-containing
           protein 3 variant protein.
          Length = 466

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = -1

Query: 326 FFVKDREFQILGKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVEK 147
           FF   ++ +I   ++D   H +   G H  +  LA   V   GD+VV S     + + E+
Sbjct: 171 FFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLA---VSPSGDYVVSSSHDKSLRLWER 227

Query: 146 RQNLLLLFDERSVNR 102
            +  L+L +ER + R
Sbjct: 228 TREPLILEEEREMER 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,263,974
Number of Sequences: 237096
Number of extensions: 1526108
Number of successful extensions: 3774
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3774
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)