Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b08r
(303 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0119 + 11485753-11486202 30 0.30
01_05_0746 + 24856362-24856710,24856799-24856986 29 0.70
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 29 0.92
02_03_0050 + 14433013-14433303 27 2.8
07_03_1031 - 23389263-23389541 27 3.7
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 3.7
02_01_0341 + 2444419-2445495 27 3.7
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 26 4.9
05_04_0099 - 17991569-17993014 26 4.9
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 26 4.9
02_05_0486 - 29423756-29423965,29425424-29425528 26 4.9
05_01_0196 + 1415664-1416842 26 6.5
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 26 6.5
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 26 6.5
02_01_0345 + 2484073-2485152 26 6.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 25 8.6
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015... 25 8.6
08_02_0366 - 16301133-16302592,16302702-16302750 25 8.6
07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279 25 8.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 25 8.6
04_03_1005 + 21646323-21646403,21646724-21646906,21648014-216481... 25 8.6
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 25 8.6
02_01_0072 - 502785-504038 25 8.6
>04_03_0119 + 11485753-11486202
Length = 149
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -3
Query: 277 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 155
G ++ WCSS P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3
Query: 226 ARSDTVPLRFAWVCIRRPPSW 164
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 28.7 bits (61), Expect = 0.92
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -1
Query: 237 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKM 127
C ++P R ++S SRG A+ HL RR + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144
>02_03_0050 + 14433013-14433303
Length = 96
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 163 SPLGRGCCQLQNGFVERYHVPIYLVLSNCKF 71
S LGR Q Q G V R H P+Y+ S C++
Sbjct: 19 SSLGRR--QQQQGAVPRGHFPVYVGESRCRY 47
>07_03_1031 - 23389263-23389541
Length = 92
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 114 RSTNPFCSWQQPRPSGDQDGG 176
R+ P+CSWQ S D GG
Sbjct: 3 RTCLPWCSWQLAAASADNSGG 23
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 201 VSRGSASVGRHLGRRWGVVAAS 136
VS G AS+GRHL RR V S
Sbjct: 9 VSAGEASLGRHLARRLVQVGVS 30
>02_01_0341 + 2444419-2445495
Length = 358
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -3
Query: 262 WCSSGTKPVPFCARSDTVPLRFAW 191
W +G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 234 GTGLVPELHHTNTSPQKHDD 293
G G V E+ HT PQ+H D
Sbjct: 3 GGGFVNEMRHTGKRPQQHRD 22
>05_04_0099 - 17991569-17993014
Length = 481
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -1
Query: 267 LCGVAPELNQCHFVPGRIQSHCVSRGSASVGRHLG 163
LCGVAPE C G CV S G LG
Sbjct: 150 LCGVAPETAGCARGGGSGDDACVVAASYGAGVALG 184
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 197 RVGLHPSAAILVAAGAWLLPATKWVCRTVSCTYL 96
R LHP A LVA LL + W C + S L
Sbjct: 55 RPSLHPLPASLVAILPLLLTSRNWQCSSASVAAL 88
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -3
Query: 199 FAWVCIRRP-PSWSPLGR 149
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
>05_01_0196 + 1415664-1416842
Length = 392
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -3
Query: 286 CFCGDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSP 158
CF W +G +PFC + + VP W + +++P
Sbjct: 229 CFDTVSCSWSHAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAP 271
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 277 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVC 185
G V S G VP+ S+ PLRF VC
Sbjct: 459 GAYIVSYSPGMGTVPWIVNSEIYPLRFRGVC 489
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -3
Query: 175 PPSWSPLGRGCCQLQNGFVER 113
PP+ + L RGCC + F ++
Sbjct: 151 PPTRTKLARGCCSTSSDFAQK 171
>02_01_0345 + 2484073-2485152
Length = 359
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 262 WCSSGTKPVPFCARSDTVPLRFAWV 188
W G +PFC R++ VP W+
Sbjct: 214 WSKVGDWALPFCGRAEFVPEHGLWL 238
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 267 LCGVAPELNQCHFVP 223
LCG+AP L C F+P
Sbjct: 299 LCGLAPPLPACSFMP 313
>10_08_0521 + 18500105-18500529,18501216-18501284,18501467-18501555,
18501726-18501838,18502023-18502124,18502576-18502663,
18502795-18503361,18503766-18504149,18504168-18504384,
18504466-18504548,18505174-18505256,18505796-18506032,
18506481-18506658,18506814-18507328,18507740-18507916,
18508385-18508768,18508885-18509031
Length = 1285
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +3
Query: 138 WQQPRPSGDQDGGRRMQTHAKRNGTVSDLAQNG 236
W +P G D R+++ + N +SD+ ++G
Sbjct: 1146 WSEPDDLGPLDNTRQLKINGSTNRHLSDMEEDG 1178
>08_02_0366 - 16301133-16302592,16302702-16302750
Length = 502
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 234 HFVPGRIQSHCVSRGSASVGR 172
HF P + S VSRG SVGR
Sbjct: 288 HFTPTVLASGKVSRGGRSVGR 308
>07_01_0332 - 2345980-2346566,2346715-2348262,2349214-2350279
Length = 1066
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 94 LVLSNCKFCFNLSIIA*WLN 35
L LSN KF NLS+IA W N
Sbjct: 390 LDLSNNKFKGNLSVIAKWSN 409
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 197 RVGLHPSAAILVAAGAWLLPA 135
R LH + +L A+GAW+ P+
Sbjct: 2330 RAALHETPFVLAASGAWVHPS 2350
>04_03_1005 +
21646323-21646403,21646724-21646906,21648014-21648133,
21648458-21648649,21648848-21649153,21650004-21650714
Length = 530
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/43 (27%), Positives = 14/43 (32%)
Frame = -3
Query: 268 FVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPLGRGCC 140
F W G C+ T + W P W PL CC
Sbjct: 72 FTWFV-GFAMAEICSSFPTTGSLYFWAAHLAGPVWGPLASWCC 113
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 115 RYHVPIYLVLSNCKFCFNLSIIA*WLNWNFSSIHIE 8
+Y IY +SN C NL+I+ W+ F +I+
Sbjct: 54 KYRKSIYKRISNFSTCSNLTILLLWIVMIFLVYYIK 89
>02_01_0072 - 502785-504038
Length = 417
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 294 SHRVSVVTCLCGVAPELNQCHF 229
SHR ++ C +AP L++ HF
Sbjct: 131 SHRAALTAASCLLAPPLHRAHF 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,705,960
Number of Sequences: 37544
Number of extensions: 183261
Number of successful extensions: 692
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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