Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b08r
(303 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08) 29 0.55
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027) 29 0.55
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 3.9
SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39) 27 3.9
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38) 27 3.9
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 27 3.9
SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067) 27 3.9
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37) 27 3.9
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05) 27 3.9
SB_54208| Best HMM Match : fn3 (HMM E-Value=0) 26 5.1
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043) 26 5.1
SB_54449| Best HMM Match : bZIP_2 (HMM E-Value=1.2) 26 5.1
SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77) 26 6.7
SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06) 26 6.7
SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6) 25 8.9
SB_10939| Best HMM Match : GLYCAM-1 (HMM E-Value=3.4) 25 8.9
SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5) 25 8.9
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.9
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39) 25 8.9
>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
Length = 291
Score = 29.5 bits (63), Expect = 0.55
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = -2
Query: 239 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 81
SAIL +V YS + S +ILVA G+ +L + W+C T SC LF +
Sbjct: 190 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 248
Query: 80 L*ILFQFVYYCIMVKL 33
L + + F+ I+V L
Sbjct: 249 LDLQYLFMSPSILVAL 264
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -2
Query: 188 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLF 93
L S +ILVA G+ +L + W+C T SC LF
Sbjct: 254 LFMSPSILVALGSAVLIHAAFYSSRTWICSTYSCRLLF 291
>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
Length = 617
Score = 29.5 bits (63), Expect = 0.55
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = -2
Query: 239 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 81
SAIL +V YS + S +ILVA G+ +L + W+C T SC LF +
Sbjct: 128 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 186
Query: 80 L*ILFQFVYYCIMVKL 33
L + + F+ I+V L
Sbjct: 187 LDLQYLFMSPSILVAL 202
Score = 29.1 bits (62), Expect = 0.72
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -2
Query: 188 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKLEF 27
L S +ILVA G+ +L + W+C T SC LF + L + + F+ I+V L
Sbjct: 213 LFMSPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGS 271
Query: 26 QLYSY 12
++ Y
Sbjct: 272 EVIIY 276
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = -2
Query: 179 SAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKL 33
S +ILVA G+ ++ + W+C T SC LF + L + + F+ I+V L
Sbjct: 262 SPSILVALGSEVIIYVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFMSPSILVAL 315
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 166 WSPLGRGCCQLQNGFVERYHVPIYLVLSNCK 74
WSP+ +L+NG + YH+ +Y + N K
Sbjct: 2182 WSPI---LPELENGIITGYHINVYELSGNLK 2209
>SB_51937| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 151
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 60 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 94
>SB_49539| Best HMM Match : RVT_1 (HMM E-Value=1.8e-39)
Length = 1311
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 60 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 94
>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
Length = 1425
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 831 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 865
>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 794
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 297 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 331
>SB_9368| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 377 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 411
>SB_155| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
Length = 296
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 162 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 196
>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
Length = 1122
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 178 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 212
>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
Length = 717
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +3
Query: 183 MQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKH 287
M+ ++ + +G+G V E+H PQKH
Sbjct: 201 MEMAESKSSELKGSGSSGSGCVEEVHQLGKKPQKH 235
>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1292
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 169 SWSPLGRGCCQLQNGFVERYHVPIYLVLSNCK 74
+W P+ + Q QNG + YHV +Y + + K
Sbjct: 526 TWQPVAK---QQQNGLITWYHVVLYDITKSVK 554
>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 235 PFCARSDTVPLRFAWVCIRRPPSWSPLGRGCC 140
P+C TV L F+W C+ + RGCC
Sbjct: 903 PWCCVFHTVDLSFSWCCL--------VSRGCC 926
>SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)
Length = 949
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = -2
Query: 293 VIVFLW*RVCVV*LRN*TSAILCQVGYSPIAFRVGLHPSAAILVAAGAWLLP 138
V++ +W C +R S LC GY + V L P + V WL P
Sbjct: 825 VVMSVWLCPCGY-VRVVMSLWLCPCGYVRVVMSVWLCPCGYVRVVMSVWLCP 875
>SB_54449| Best HMM Match : bZIP_2 (HMM E-Value=1.2)
Length = 258
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +3
Query: 138 WQQPRPSGDQDGGRRMQTHAKRN-----GTVSDLAQNGTGLVPEL 257
W +PR ++DGG R R G+V+++ Q T V EL
Sbjct: 67 WSKPRQLFNEDGGVRQDVAKLRGFRLAMGSVAEIIQENTERVQEL 111
>SB_58262| Best HMM Match : Cytochrom_B_C (HMM E-Value=0.77)
Length = 393
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 170 ILVAAGAWLLPATKWVCRTVSCTYLFSFK*L*ILFQFVY 54
+L A W+ P ++W C VS L + L ++ Q+VY
Sbjct: 98 LLWACLIWITPFSRWFC-MVSSPGLVLYAELLLIIQYVY 135
>SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06)
Length = 260
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 132 CSWQQPRPSGDQDGGRR 182
CSW PSGD GRR
Sbjct: 145 CSWHNASPSGDVPIGRR 161
>SB_47559| Best HMM Match : Antimicrobial_9 (HMM E-Value=3.6)
Length = 254
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 135 SWQQPRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTG 242
SW+QP+ G++ G + AKR+ Q G G
Sbjct: 64 SWEQPKRYGEKGLGSNQKDMAKRSWEQPKRWQKGLG 99
>SB_10939| Best HMM Match : GLYCAM-1 (HMM E-Value=3.4)
Length = 210
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 129 FCSWQQPRPSGDQDGGRRMQTHAKRNGTVS 218
F S RP DG RR H K+ G +S
Sbjct: 61 FSSSSCKRPRLSTDGSRRSSRHRKQRGEIS 90
>SB_58243| Best HMM Match : DUF584 (HMM E-Value=1.5)
Length = 1308
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 133 VAGSNHAPAATKMAADGCRPTRNAMGLYPTWHKMALV*FRSYTTQ----TRHHRNTMTD 297
+AGSNH P K+AA+ R +Y T ++ F+ T+ ++ R+ +TD
Sbjct: 8 LAGSNHIPGIPKLAANEQSTQRVERTIYNTTPVASITSFQQNFTKASSSAKNVRSVVTD 66
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 156 SGDQDGGRRMQTHAKRNGTVSDLAQNGTGLV 248
SG + GGR H+ + GT+ +A G+ +V
Sbjct: 544 SGLRVGGRCTAKHSSKEGTILGVANEGSKMV 574
>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 198 KRNGTVSDLAQNGTGLVPELHHTNTS 275
KRN +S+ A N +P+L+ TS
Sbjct: 24 KRNEKISEAANNAVSQIPDLNQGKTS 49
>SB_48330| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 255 APELNQCHFVPGRIQSHCVSRGSASVGRHLGRR 157
APEL+ +++P + Q + SA VG+ RR
Sbjct: 105 APELSD-YYIPSKTQKNAELASSAQVGKLAARR 136
>SB_30408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +3
Query: 168 DGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTN 269
D +R Q +K N + +NG + P+ HH N
Sbjct: 470 DSKKRHQYCSKGNNSWCGFVRNGKEVEPQTHHLN 503
>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
Length = 1750
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 231 NGTGLVPELHHTNTSPQKH 287
+G+G V E+H PQKH
Sbjct: 156 SGSGCVEEVHQLGKKPQKH 174
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,047,814
Number of Sequences: 59808
Number of extensions: 207017
Number of successful extensions: 804
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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