Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b08r
         (303 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical pr...    29   0.85 
Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical pr...    28   1.1  
Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical pr...    28   1.1  
U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical ...    27   3.4  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    27   3.4  
AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical...    26   4.5  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    26   6.0  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    26   6.0  
Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical pr...    25   7.9  
Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical...    25   7.9  

>Z83112-1|CAB05538.1|  742|Caenorhabditis elegans Hypothetical
           protein K02B7.1 protein.
          Length = 742

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 172 PSWSPLGRGCCQLQNGFVERYHVPIYLVLSNC 77
           P +SP G G C  QN ++   H+  +L    C
Sbjct: 429 PHYSPKGNGICSRQNRWIFHQHLRFHLDFVRC 460


>Z70212-1|CAA94162.1|  406|Caenorhabditis elegans Hypothetical
           protein R04D3.2 protein.
          Length = 406

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 174 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 257
           G+R++ HA+  GTV    QN TG+V  L
Sbjct: 90  GQRLRAHAELGGTVLVTEQNLTGVVESL 117


>Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK455.3 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 254 LRN*TSAILCQVGYSPIAFRVGLHPSAAILVAAGAWLLPATKWVCRTVS 108
           +RN T+ ++  +  S + F +   P  A+  AA  W+ P  +W C  ++
Sbjct: 73  MRNSTNTLIIGLAISDLMFLLLCVPFTAVDYAAPTWIFP--EWTCSMIN 119


>U41272-1|AAA82446.2|  584|Caenorhabditis elegans Hypothetical
           protein T03G11.4 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 159 GDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSPQKHD 290
           G Q G  R+    A++ G T  ++  N TGL PE+ H N  P K D
Sbjct: 426 GSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKED 471


>AF067940-6|AAC19205.1|  223|Caenorhabditis elegans Hypothetical
           protein F36F12.6 protein.
          Length = 223

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 132 CSWQQPRPSGDQ 167
           C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 136 LQNGFVERYHVPIYLVLSNCKFCFNLSII 50
           L  G+V RY  PI+L+   C F F L ++
Sbjct: 75  LYEGYVSRYLAPIFLI-DFCAFYFTLILL 102


>AC025727-10|AAK66029.1|  707|Caenorhabditis elegans Hypothetical
           protein Y73E7A.8 protein.
          Length = 707

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 184 IRRPPSWSPLGRGCCQLQNGFVERYHVPIYLVLSNCKFCFNLSIIA*WLNWNFSS 20
           +  PPSW+P GR      NGF         L+ +N +  +  S+ A W  W+F S
Sbjct: 24  VTTPPSWAPTGR--LNQFNGFATPRP---SLLPANAQMVY-ASVWAAWSAWSFCS 72


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 117 STNPFCSWQQPRPSGDQD 170
           S+NPF S++QPR   D D
Sbjct: 218 SSNPFTSYRQPRNEFDDD 235


>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 150 RPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQK 284
           R + DQ  G +      +   +  L Q    + PELHH  T  +K
Sbjct: 75  RDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKK 119


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 221 PGTKWHWFSSG 253
           P  KWHWF +G
Sbjct: 533 PSPKWHWFKNG 543


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 221 PGTKWHWFSSG 253
           P  KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 221 PGTKWHWFSSG 253
           P  KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 221 PGTKWHWFSSG 253
           P  KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516


>Z83234-7|CAB76745.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 156 SGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKHD 290
           S ++   RRM+   +++    D     T + PEL++TN +   +D
Sbjct: 55  SAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNPFND 99


>Z82067-4|CAB76738.1|  667|Caenorhabditis elegans Hypothetical
           protein W03H9.4 protein.
          Length = 667

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +3

Query: 156 SGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQKHD 290
           S ++   RRM+   +++    D     T + PEL++TN +   +D
Sbjct: 55  SAEEKRARRMEKKMRKDAKRKDADAEDTLIPPELNYTNLNNPFND 99


>Z81057-5|CAB02917.2|  846|Caenorhabditis elegans Hypothetical
           protein F10D11.6 protein.
          Length = 846

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 PLGRGCCQLQNGFVERYHVPIYLVL 86
           P+ +GC  + N +V RY  P  +VL
Sbjct: 100 PMVQGCVNIYNLYVSRYRCPQRVVL 124


>AL110485-23|CAB60377.3|  770|Caenorhabditis elegans Hypothetical
           protein Y46G5A.29 protein.
          Length = 770

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -1

Query: 285 VSVVTCLCGVAPELNQCHFVPGRIQS---HCVSRGSASVGRHLGRR 157
           +S++T    +  +L+  HF  G  ++   HC SR S  + RHL  R
Sbjct: 7   LSLLTFDLVIGSDLDANHFFKGLYETSGFHCYSRDSMRLPRHLHGR 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,347,491
Number of Sequences: 27780
Number of extensions: 146929
Number of successful extensions: 402
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)