Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b08r
         (303 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    27   2.4  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    27   3.2  
At5g63760.2 68418.m08003 IBR domain-containing protein contains ...    21   4.6  
At5g63760.1 68418.m08002 IBR domain-containing protein contains ...    21   4.6  
At1g32800.1 68414.m04043 PHD finger protein-related contains low...    26   5.6  
At1g30220.1 68414.m03697 sugar transporter family protein simila...    26   5.6  
At3g08810.1 68416.m01023 kelch repeat-containing F-box family pr...    25   7.4  
At2g04280.1 68415.m00420 expressed protein                             25   7.4  
At5g58370.2 68418.m07309 expressed protein                             25   9.7  
At5g58370.1 68418.m07308 expressed protein                             25   9.7  
At4g12700.1 68417.m01994 expressed protein                             25   9.7  
At1g28520.1 68414.m03506 expressed protein                             25   9.7  

>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 207 GTVSDLAQNGTGLVPELHHTNTSPQKHDD 293
           G V+ +AQ G  L+P++H+    P +H D
Sbjct: 753 GFVNMMAQYGRPLLPKMHYIQPIPVRHID 781


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 141 QQPRPSGDQDGGRRMQTHAKRNGTVS 218
           Q P+PSGD+  GR  + H   +G  S
Sbjct: 264 QDPKPSGDRVDGREHRDHNPGHGDTS 289


>At5g63760.2 68418.m08003 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 452

 Score = 21.0 bits (42), Expect(3) = 4.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 286 CFCGDVFVW 260
           C CG +F W
Sbjct: 154 CLCGHIFCW 162



 Score = 21.0 bits (42), Expect(3) = 4.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 262 WCSSGTKPVPFC 227
           W  + TKP P C
Sbjct: 200 WIDANTKPCPHC 211



 Score = 20.6 bits (41), Expect(3) = 4.6
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -3

Query: 202 RFAWVCIRRPPSWSPLG 152
           RF W C R P +    G
Sbjct: 234 RFCWKCFRSPETHGTSG 250


>At5g63760.1 68418.m08002 IBR domain-containing protein contains
           similarity to Swiss-Prot:Q94981 ariadne-1 protein
           (Ari-1) [Drosophila melanogaster] and Pfam:PF01485 IBR
           domain
          Length = 452

 Score = 21.0 bits (42), Expect(3) = 4.6
 Identities = 5/9 (55%), Positives = 6/9 (66%)
 Frame = -3

Query: 286 CFCGDVFVW 260
           C CG +F W
Sbjct: 154 CLCGHIFCW 162



 Score = 21.0 bits (42), Expect(3) = 4.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 262 WCSSGTKPVPFC 227
           W  + TKP P C
Sbjct: 200 WIDANTKPCPHC 211



 Score = 20.6 bits (41), Expect(3) = 4.6
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -3

Query: 202 RFAWVCIRRPPSWSPLG 152
           RF W C R P +    G
Sbjct: 234 RFCWKCFRSPETHGTSG 250


>At1g32800.1 68414.m04043 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 398

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +3

Query: 159 GDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEL--HH 263
           GD+ G   +     R   +SD+  NGTG   E   HH
Sbjct: 320 GDESGNTEIGVECSREQNLSDVHANGTGKQEEKAGHH 356


>At1g30220.1 68414.m03697 sugar transporter family protein similar
           to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit)
           [Homo sapiens]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 580

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 277 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVC 185
           G   ++ S G   VP+   S+  PLRF  +C
Sbjct: 461 GLYIIFFSPGMGTVPWIVNSEIYPLRFRGIC 491


>At3g08810.1 68416.m01023 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 343

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 212 CIRPGTKWHWFSSGATPHKHVTTETR 289
           C+R  T + WFS    P + +T E R
Sbjct: 79  CLRCSTGYRWFSLSRKPDQTLTYEER 104


>At2g04280.1 68415.m00420 expressed protein
          Length = 568

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 103 PIYLVLSNCKFCFNLSIIA*WLNWNFSSIHIE 8
           P +L+  + +    +S IA  LNW++ ++HIE
Sbjct: 406 PWHLLWKSRRLMEIVSAIASRLNWDYDAVHIE 437


>At5g58370.2 68418.m07309 expressed protein
          Length = 465

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 192 GSASVGRHLGRRWGVVAASYKMGL 121
           G +S+   L R+WGVV  S K GL
Sbjct: 300 GKSSLLNALTRQWGVVRTSDKPGL 323


>At5g58370.1 68418.m07308 expressed protein
          Length = 446

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 192 GSASVGRHLGRRWGVVAASYKMGL 121
           G +S+   L R+WGVV  S K GL
Sbjct: 300 GKSSLLNALTRQWGVVRTSDKPGL 323


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 61  LSIIA*WLNWNFSSIHIE 8
           +S IA  LNW++ +IHIE
Sbjct: 413 VSAIASRLNWDYDAIHIE 430


>At1g28520.1 68414.m03506 expressed protein
          Length = 486

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 191 PRETQWDCIRPGTKWHWF 244
           P+   WDC RP   + WF
Sbjct: 215 PKCALWDCPRPAQGFDWF 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,869,810
Number of Sequences: 28952
Number of extensions: 137260
Number of successful extensions: 355
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)