Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b07r
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_36070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)                     28   8.8  

>SB_8761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 221

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 352 PTSNSTSTVKANVTKATLTRRPCPTTQIGIRKNIN*QITTSK 477
           P  N T T  A +TKA+ +  P PT ++ I  + + ++T ++
Sbjct: 174 PKLNPTLTCHARLTKASDSNDPVPTLELTIESSTSGRVTENR 215


>SB_36070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 392 LKQH*HADRVPQRKLEYAKTLIDKLQRVSMWC 487
           LK +  ADR+P   L+ +   ID   +VS WC
Sbjct: 29  LKPNQTADRIPYLSLDTSYVAIDMRTQVSEWC 60


>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 599 ICCLSGLVANDETAQCFWIGMFLSVMASCGNGASTVSTPS 718
           +  L+  +AN+ T +  WIG F +V  S G  +S    P+
Sbjct: 61  LATLTASIANNSTRKKLWIGAFFTVDISDGGWSSAGVLPA 100


>SB_12922| Best HMM Match : MFS_1 (HMM E-Value=1.1)
          Length = 473

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +1

Query: 316 NSFLLQSRQIIIPTSNSTSTVKANVTKATLTRRPCPTTQIGIRKNIN*QITT 471
           ++F+L     +I T ++T  V + ++  TL     PTT + I++NI   ITT
Sbjct: 122 STFILSYNTTVIATPDTTRFVTSTISSFTLNESANPTTSL-IQQNIT-LITT 171


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,076
Number of Sequences: 59808
Number of extensions: 361605
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)