Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b07r
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       28   0.10 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   6.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = -3

Query: 503 ISKFINTTYLLVVICQLMFLRIPICVVGHGLRVNVALVTFAFTVLVEFEVGIIICRDCNK 324
           IS   NTT L+++ C+    +  I ++   L +   LVTF   +++  E+G  I      
Sbjct: 50  ISAIGNTTVLILITCRKRVSKSRIHIMLMHLAIADLLVTF---LMMPLEIGWAITVSWKA 106

Query: 323 NEL*CTILNSIRM 285
            ++ C I+   RM
Sbjct: 107 GDVMCRIMAFFRM 119


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 355 TSNSTSTVKANVTKATLTRRPCPTTQIGIRKNI 453
           +S STS   A+ T ATL    CP+  + ++ +I
Sbjct: 836 SSTSTSPRPASSTAATLVLSGCPSNMMELQVDI 868


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 686 HNSPSRTGTFLSRSTERSHHSP 621
           HNSPS TG+    S   +  SP
Sbjct: 59  HNSPSPTGSSPQHSGSSASTSP 80


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 399 NINTQTVSHNANWNTQKH*LTNYN 470
           +++ +T+ +N N+N   +   NYN
Sbjct: 84  SLSNKTIHNNNNYNNNNYNNYNYN 107


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 410  ADRVPQRKLEYAKTLIDKLQRVSMW 484
            + +VP  +L +  + +DK +R   W
Sbjct: 1227 SQKVPPNQLTHEASELDKTRRYDFW 1251


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,755
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)