Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b07f
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 29 0.76
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 28 1.3
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 1.8
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 2.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 26 5.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.4
SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo... 25 7.1
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 7.1
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 7.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 7.1
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 617 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSG 471
+L + G P+G+ +S++ +L TDF +++ + + S LS T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +1
Query: 187 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 276
G F+ +D+E IRE +AE++KMEE+ K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Frame = +1
Query: 385 HWDSLNSPLIQDEG---DGKTLKLRFDVSQYTPEEI-----VVKTVDNKLLVHAKHEEKS 540
+++S P+ DEG D + + RF + + I ++ V + + + H ++S
Sbjct: 305 NFNSYIKPVAGDEGRVEDEEFEENRFSIEDIEIDSIPAVRRLLGDVMSDIPYYMSHHKES 364
Query: 541 DTKSVYREYNREFLLPKGTNP 603
KSV RE NR + L K NP
Sbjct: 365 IIKSVIREANRVYHLWKDCNP 385
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 1 GRVYSGRLMISTVLSAVECVLFQ*NVFTRERFSVCLVSTIS 123
G S MIS + A+ ++ + VF E F V L+ST++
Sbjct: 832 GLAGSSTHMISATIIAISSIVMEYKVFISEPFLVQLISTLN 872
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 483 DLFGSILADIKAKLESLAVTLVLNERRV*AIPVTGLSKLSAVTVL*RC 340
D G I+ + K K + V LN+ R+ + TG + L+++ V RC
Sbjct: 843 DFCGFIVFENKLKSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRC 890
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +1
Query: 457 VSQYTPEEIVVKTVDNKLLVHAKHEEKS-DTKSVYREYNREFLLPKGTNPEAIKSSL 624
V TP + V DNK LV K EK + +S E +E K T PE + +L
Sbjct: 1347 VPDSTPSDAVASETDNKNLVENKAVEKRVEARSSANERKQEERRRK-TTPEGNRRAL 1402
>SPBC16E9.15 |||heat shock factor binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 75
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 187 GDFSVIDTEFSSIRERFDAEMRKMEEEMSKFRSELMNRESN 309
GDF + +FS E + ++EE M E MN++S+
Sbjct: 31 GDFETLQKQFSEKLETMSTRLDQLEESM----REAMNKKSS 67
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 197 EKSPSLMGIFLLRPLSAIFHVICRVEIVETKQTLKRSRVNTFHWNNTHSTADKTVLIISR 18
+KS ++G F S++ V I+E+ +L R N+F +NN S + + +I+
Sbjct: 30 QKSSKIVGSFTNSQNSSVGSV--HSPILESPTSLNRQHRNSFSFNNVSSPSLEDERLINF 87
Query: 17 P 15
P
Sbjct: 88 P 88
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 391 DSLNSPLIQDEGDGKTLKLRFDVSQYTPEEIVVKTVDNK 507
+S+ SP + EG +LK R + TP+ + T+D K
Sbjct: 554 NSITSPGVLPEGMAASLKKRTTNTAATPQAALPTTLDTK 592
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -2
Query: 578 NSLLYSLYTDFVSDFSSCLAWTSNLLSTVLTTISSGV 468
+S++ S T +S SS +S+ S+ +TTISSG+
Sbjct: 528 SSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGI 564
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 168 KYPHQAWRFFGYRY 209
+YP AW+FF RY
Sbjct: 1511 RYPEDAWKFFMVRY 1524
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,027
Number of Sequences: 5004
Number of extensions: 47167
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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