Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b06r
         (782 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.2  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   1.2  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.8  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   6.4  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   8.4  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 SAETSVCSDNGIIIAGDGYNTTSV 674
           +AE   CS   I + GDGY   S+
Sbjct: 449 NAENGSCSGKTITVGGDGYADISL 472



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 GSYGAHSVR*GRNYIHIPY 346
           G+ G+ + R G+NY  +PY
Sbjct: 125 GTAGSQADRDGKNYPAVPY 143


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 SAETSVCSDNGIIIAGDGYNTTSV 674
           +AE   CS   I + GDGY   S+
Sbjct: 450 NAENGSCSGKTITVGGDGYADISL 473



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 GSYGAHSVR*GRNYIHIPY 346
           G+ G+ + R G+NY  +PY
Sbjct: 126 GTAGSQADRDGKNYPAVPY 144


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 603 SAETSVCSDNGIIIAGDGYNTTSV 674
           +AE   CS   I + GDGY   S+
Sbjct: 450 NAENGSCSGKTITVGGDGYADISL 473



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 GSYGAHSVR*GRNYIHIPY 346
           G+ G+ + R G+NY  +PY
Sbjct: 126 GTAGSQADRDGKNYPAVPY 144


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 410 LYYKRFFPYYVSNVL 366
           +++KRF P YVS +L
Sbjct: 168 VFFKRFLPVYVSYLL 182


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 424 ICATAGVVIDLLCSC 468
           IC T GV+I + C C
Sbjct: 42  ICYTIGVIITIGCLC 56


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 320 PIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLK 168
           PIG      F A  +AA+ L P  ++   L N +     P P +   AL K
Sbjct: 280 PIGASHLPYFAAAVAAASNLSPKTNSSPDLWNGKLKHGGPTPSDATKALEK 330


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 503 SRLMCHTSSQSLPILYSQI 559
           SR+M H +S   PILY+ I
Sbjct: 338 SRIMFHINSAVNPILYNII 356


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -2

Query: 718 LCLVRNSIVSSPTRTTEVVL*PSPAMIMP 632
           LC+V NS+      T   V  P  A I P
Sbjct: 306 LCVVNNSVGGESVETVLTVTAPLKAKIEP 334


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 13   FSCMKYLLLFFVT 51
            F+C+KY ++++VT
Sbjct: 999  FNCLKYGVIYYVT 1011


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/13 (46%), Positives = 12/13 (92%)
 Frame = +1

Query: 13   FSCMKYLLLFFVT 51
            F+C+KY ++++VT
Sbjct: 999  FNCLKYGVIYYVT 1011


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 427 RCSQLCCITNDFSHTTYPTCWRVWTATVRDVYIVTTLSDTVRAITSALVVPLLHSCNR-S 251
           R  Q+  +    + T YP+    +  + R+   +  L+    A +S + +P LHS +   
Sbjct: 358 RAYQVAVLEYKGTQTNYPSYEPTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLDEWD 417

Query: 250 STIK 239
            T+K
Sbjct: 418 DTLK 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,892
Number of Sequences: 336
Number of extensions: 4401
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)