Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b06r
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 227 8e-60
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 80 2e-15
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 77 1e-14
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 53 2e-07
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P... 48 9e-06
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 46 2e-05
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 46 2e-05
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 46 4e-05
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 42 5e-04
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 42 5e-04
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 41 0.001
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 41 0.001
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 32 0.37
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 32 0.37
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 32 0.49
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 30 2.0
At4g26920.1 68417.m03874 hypothetical protein 29 2.6
At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-... 29 3.5
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 29 4.6
At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related simi... 28 6.1
At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma su... 28 6.1
At3g09140.1 68416.m01075 expressed protein contains Pfam profile... 28 8.0
At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-... 28 8.0
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 227 bits (554), Expect = 8e-60
Identities = 110/221 (49%), Positives = 150/221 (67%), Gaps = 5/221 (2%)
Frame = -1
Query: 704 KQH-RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATG 528
KQH + PY +NGG+ VAIAG DY VI ADTR+STG+SI +RD K+ KL++ VL ++G
Sbjct: 3 KQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSG 62
Query: 527 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 348
D L ++L++R +Y+H+HNK M+ PA+AQ+LS LY+KRFFPYY NVL GLD +
Sbjct: 63 FQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEE 122
Query: 347 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI----GLKNMQNVTEAPLPREKAL 180
GKGCV++YD +G R + A GS + + P LDNQ+ L + + PL +A+
Sbjct: 123 GKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAV 182
Query: 179 ALLKDVFISAAERDIYTGDSIYILIITASGIQEEKFELRKD 57
L+K VF SA ERDIYTGD + I+I+ A GI+ E +LRKD
Sbjct: 183 DLVKTVFASATERDIYTGDKLEIMILKADGIKTELMDLRKD 223
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 79.8 bits (188), Expect = 2e-15
Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Frame = -1
Query: 674 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 495
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 494 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 315
L R ++Y+ + M A ++S +LY KRF PY V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSI 126
Query: 314 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 138
G +F G+A+ L + + + + E+ + +S+ +RD
Sbjct: 127 GAKELAKDFVVSGTASESLYGA---------CEAMYKPDMEAEELFETISQALLSSVDRD 177
Query: 137 IYTGDSIYILIITASGIQEEKFELRKD 57
+G ++ I+T + I+E + R D
Sbjct: 178 CLSGWGGHVYIVTPTEIKERILKGRMD 204
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 77.4 bits (182), Expect = 1e-14
Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 1/207 (0%)
Frame = -1
Query: 674 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 495
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 494 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 315
L R ++Y+ + M A ++S +LY KRF P+ V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSI 126
Query: 314 G-HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERD 138
G +F G+A+ L + + + E+ + +S+ +RD
Sbjct: 127 GAKELAKDFVVSGTASESLYGACEAMF---------KPDMEAEELFETISQALLSSVDRD 177
Query: 137 IYTGDSIYILIITASGIQEEKFELRKD 57
+G ++ ++T ++E + R D
Sbjct: 178 CLSGWGGHVYVVTPKEVKERILKGRMD 204
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 53.2 bits (122), Expect = 2e-07
Identities = 45/195 (23%), Positives = 83/195 (42%)
Frame = -1
Query: 671 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 492
G +I+ + + V+GAD+R STG + R K+ +L+++ + +G D+ ++ +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 491 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 312
+ + + +H + T A ++ ML Y ++ G D G +Y G
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLI-RMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGG 130
Query: 311 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIY 132
F GGS ++ L D Q NM +E+A L+ A RD
Sbjct: 131 TVVEQPFAIGGSGSSYLYGFFD-QAWKDNM--------TKEEAEQLVVKAVSLAIARDGA 181
Query: 131 TGDSIYILIITASGI 87
+G + +II + G+
Sbjct: 182 SGGVVRTVIINSEGV 196
>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
(PRGB) identical to GB:CAA74026 from [Arabidopsis
thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
identical to cDNA proteasome subunit prgb GI:2511589
Length = 204
Score = 47.6 bits (108), Expect = 9e-06
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = -1
Query: 662 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 483
+ + G+ +A++ ADT ++ ++ K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 482 MQMYEHEHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPI 315
+ +Y+ + +TT A A L R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYI 120
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 46.4 bits (105), Expect = 2e-05
Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 1/195 (0%)
Frame = -1
Query: 662 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 483
+ + G+ +A++ ADT ++ + K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 482 MQMYEHEHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPIGHC 306
+ +Y+ + ++T A A L R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATL 123
Query: 305 ARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAERDIYTG 126
+ + A G + L M + + E+A+ L+ + R +
Sbjct: 124 HKVDKGAFG---------YGSYFSLSTMDRHYRSDMSVEEAIELVDKCILEIRSRLVIAP 174
Query: 125 DSIYILIITASGIQE 81
+ I I+ G +E
Sbjct: 175 PNFVIKIVDKDGARE 189
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/156 (24%), Positives = 70/156 (44%)
Frame = -1
Query: 671 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 492
G + +A + ++ AD+R S G I ++ KK+ +++ + G D R L
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 491 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 312
+ +++E + + ++ +++L+ MLY R V ++AG D G G Y + G
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGG 176
Query: 311 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEA 204
F GS + +LD+ G K +V EA
Sbjct: 177 RLKGDRFSV-GSGSPYAYGVLDS--GYKFDMSVEEA 209
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 45.6 bits (103), Expect = 4e-05
Identities = 36/143 (25%), Positives = 65/143 (45%)
Frame = -1
Query: 632 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 453
++ AD+R S G I ++ KK+ +++ + G D R L + +++E + +
Sbjct: 70 MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 129
Query: 452 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 273
++ +++L+ MLY R V ++AG D G G Y + G F GS
Sbjct: 130 RISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSG 188
Query: 272 AAQLQPLLDNQIGLKNMQNVTEA 204
+ +LD+ G K +V EA
Sbjct: 189 SPYAYGVLDS--GYKYDMSVEEA 209
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.9 bits (94), Expect = 5e-04
Identities = 37/195 (18%), Positives = 86/195 (44%)
Frame = -1
Query: 683 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 504
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 503 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 324
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 323 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 144
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAEAICSGIF 203
Query: 143 RDIYTGDSIYILIIT 99
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 41.9 bits (94), Expect = 5e-04
Identities = 37/195 (18%), Positives = 86/195 (44%)
Frame = -1
Query: 683 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 504
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 503 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 324
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 323 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 144
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAEAICSGIF 203
Query: 143 RDIYTGDSIYILIIT 99
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/195 (18%), Positives = 86/195 (44%)
Frame = -1
Query: 683 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 504
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 503 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 324
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 323 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 144
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAESICSGIF 203
Query: 143 RDIYTGDSIYILIIT 99
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/195 (18%), Positives = 86/195 (44%)
Frame = -1
Query: 683 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 504
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 503 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSY 324
T ++ ++++++ ++ + +L L+ + + VL G+D G +++
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITGPH-LHTI 152
Query: 323 DPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVFISAAE 144
P G F GS + + + K + +T R++ + L+ + S
Sbjct: 153 YPHGSTDTLPFATMGSGSLAAMSVFE----AKYKEGLT-----RDEGIKLVAESICSGIF 203
Query: 143 RDIYTGDSIYILIIT 99
D+ +G ++ I +IT
Sbjct: 204 NDLGSGSNVDICVIT 218
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = -1
Query: 569 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 396
LF +++ L ATG D +L + + + + + M +A+ ++ + +Y +
Sbjct: 69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQH 128
Query: 395 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 237
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 32.3 bits (70), Expect = 0.37
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = -1
Query: 569 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 396
LF +++ L ATG D+ +L + + + ++ M +A+ ++ + +Y +
Sbjct: 69 LFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQH 128
Query: 395 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 237
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 31.9 bits (69), Expect = 0.49
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = +1
Query: 448 IDLLCSCSYICILACRRRVKVNVSHQQPVAPNTVLSDNLNS 570
+++L +C C LA R R ++N++H+QP P+ +++ L +
Sbjct: 1122 LEILVTCKR-CYLA-RARSQININHRQPTTPSVLINGQLQN 1160
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 29.9 bits (64), Expect = 2.0
Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Frame = -1
Query: 671 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 492
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 491 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 330
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 329 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALAL 174
+ P G+ + A GS + + L+ + ++ Q ++ L ++ +A+
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERK--FESFQESSKEDLIKDAIMAI 195
>At4g26920.1 68417.m03874 hypothetical protein
Length = 461
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 428 QMLSTMLYYKRFFPYYVSNV 369
+ML+ YY RFFP+Y NV
Sbjct: 93 EMLTLNEYYSRFFPWYAKNV 112
>At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-2)
similar to topoisomerase 6 subunit A (spo11)
[Arabidopsis thaliana] GI:12331186; contains Pfam
profile PF04406: Type IIB DNA topoisomerase; identical
to cDNA putative topoisomerase VIA (SPO11 gene 2)
GI:7270976
Length = 383
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 594 GKSSAETSVCSDNGIIIAGD-GYNTTSVVRVGLETMLFRTRHSIFRKVL 737
GK + + S C +G I GD +++R ++ +H+IF +++
Sbjct: 178 GKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLV 226
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 28.7 bits (61), Expect = 4.6
Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Frame = -1
Query: 671 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 492
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 491 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 330
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 329 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQ 240
+ P G+ + A GS + + L+ +
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERR 175
>At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related similar
to minor outer capsid protein VP4 (GI:13446784) [Human
rotavirus C]; similar to cytochrome P-450 aromatase
(GI:21170) [Gallus gallus];
Length = 193
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -1
Query: 338 CVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPREKALALLKDVF 159
C Y Y IG+ GG + PL DN++ +K +Q +P+P ++ + V
Sbjct: 6 CAYFY--IGYDVPTVLNEGGGG--RKPPLTDNKLRIKFIQTTKMSPVPNRESSNFFRFVA 61
Query: 158 ISAAERDIYTGDSIY 114
S E +++
Sbjct: 62 FSMIENKTIDSSTVH 76
>At2g45730.1 68415.m05688 eukaryotic initiation factor 3 gamma
subunit family protein contains Pfam profile PF04189:
Eukaryotic initiation factor 3, gamma subunit
Length = 446
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 158 ISAAERDIYTGDSIYILIITASGIQEEKFELRKD*FVTKKSNKY 27
I A R+ GD I +I S ++KF+L ++ + KK KY
Sbjct: 122 IEAMRREGAKGDEIIEALIANSKTFDKKFQLSQEKYKLKKQKKY 165
>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
PF05056: Protein of unknown function (DUF674);
expression supported by MPSS
Length = 473
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = +1
Query: 466 CSYICILACRRRVKVNVSHQQPVAPNTVLSDNLNSFF 576
CS+ C++ + + P PN++ N N FF
Sbjct: 371 CSFKCVVETNNEYDFKFTRKMPPRPNSLKEKNQNMFF 407
>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
alpha-L-fucosidase, putative similar to
alpha-L-fucosidase SP:P10901 from [Dictyostelium
discoideum]
Length = 506
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -3
Query: 603 WIFHIYQRPKKAVQII*EY--SIGSDWLLV*HINLDASSTSEDADVR 469
W +H + PK AVQ++ Y S+G + L + ++ ++S + D++
Sbjct: 285 WFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIK 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,268,299
Number of Sequences: 28952
Number of extensions: 369509
Number of successful extensions: 933
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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