Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b06f
(640 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 162 3e-41
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce... 83 2e-17
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 51 1e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 45 8e-06
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 30 0.25
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 29 0.75
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 1.3
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 1.7
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 4.0
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 26 4.0
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 7.0
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 7.0
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.0
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory... 25 9.2
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 25 9.2
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 25 9.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.2
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 25 9.2
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 9.2
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 162 bits (394), Expect = 3e-41
Identities = 73/159 (45%), Positives = 105/159 (66%)
Frame = +2
Query: 131 QHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCW 310
Q +F+PY NGG+ VAIAGD +A++ DTR G++I TR Q ++ ++ + V+GA+G
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFE 62
Query: 311 CDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGK 490
D L L + +Q R+ +Y H + M+ + A M+ T+LY KRFFPYYV +AG+D +GK
Sbjct: 63 ADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGK 122
Query: 491 GCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKN 607
G +YS+DP+G R RAGGSAA + P LDNQ+ L N
Sbjct: 123 GEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNLHN 161
>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 204
Score = 83.4 bits (197), Expect = 2e-17
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Frame = +2
Query: 158 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 337
NGGS VA+AG + I +D RL T + K+F + + T LG TG D TL L
Sbjct: 7 NGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYEL 66
Query: 338 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
+ ++ +Y+ + + A ++S+ LY KRF PY+ V+AG+ +D + +D I
Sbjct: 67 FRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSI 126
Query: 518 GHCA--RHNFRAGGSAAAQLQPLLDN 589
G C +F G+A QL + ++
Sbjct: 127 G-CIDFAEDFIVSGTATEQLYGMCES 151
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 51.2 bits (117), Expect = 1e-07
Identities = 38/142 (26%), Positives = 61/142 (42%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +I A+ D ++ AD+R + G I R KL +L+++ +G DT T+ LL
Sbjct: 24 GTTITALRYKDGVILAADSRTTMGAYIANRVTDKLTQLTDNIWCCRSGSAADTQTVADLL 83
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
+ + MY + + A + S M Y + ++AG D G VYS G
Sbjct: 84 KYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNM-LSAGLIVAGYDEKTGGDVYSIPLGG 142
Query: 521 HCARHNFRAGGSAAAQLQPLLD 586
+ GGS +A + D
Sbjct: 143 SLHKQPLAIGGSGSAFIYGFCD 164
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 45.2 bits (102), Expect = 8e-06
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +IV + D V+GADTR + G I ++ KKL +S + G DT +T ++
Sbjct: 35 GTTIVGVIAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMI 94
Query: 341 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 487
+ ++++ + + K A+ + + Y+ Y+ VL G D G
Sbjct: 95 SSNIELHSLYTNRKPRVVTALTMLKQHLFRYQGHIGAYL--VLGGYDCKG 142
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 30.3 bits (65), Expect = 0.25
Identities = 30/162 (18%), Positives = 64/162 (39%), Gaps = 4/162 (2%)
Frame = +2
Query: 155 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 334
++ G + I D V+ A+ ++++ +KL+ + ++ + G D L
Sbjct: 29 NHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILIN 88
Query: 335 LLQARMQMYEHEHNKSMTTPAVAQMLSTM----LYYKRFFPYYVSNVLAGLDSDGKGCVY 502
+ Q Y N+ M + + + + Y P+ VS + AG D ++
Sbjct: 89 YARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLF 148
Query: 503 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEA 628
+P G+ + G + +Q L+ + K+ N+ EA
Sbjct: 149 QSNPSGNYGSWQANSIGGNSTSVQSLMRQE--YKDDINLDEA 188
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 28.7 bits (61), Expect = 0.75
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 380 ICYARVRTSASSLVEDASRLMCHTSSQSLPILY 282
+CY+ T++ L+E + H + SLPI+Y
Sbjct: 828 VCYSSFLTASPRLMEPVYMVEVHAPADSLPIIY 860
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 86 SVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGD-DYAVIGADT 217
S N F P K ++ +GG+ AIA D YA +G+DT
Sbjct: 118 SENNLFGRTVNPVVKDSNYDVGGSSGGAAAAIAADICYASVGSDT 162
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.5 bits (58), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 351 CRCTNTSITNL*PLRQSHRCSQLCCI 428
CRCT T N+ L Q + + +CCI
Sbjct: 743 CRCTPTQKANMTRLIQEKKQASVCCI 768
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 253 VSGIYGKSSAETSVCSDNGIIIAGDGYN 170
V G G ++E VCSD G+ + DG N
Sbjct: 77 VRGRRGAVASEVPVCSDIGVSMLADGGN 104
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 176 AIAGDDYAVIGADTRLSTGFSI 241
AI GD Y+ IG++ GFSI
Sbjct: 321 AIVGDTYSTIGSNVEALPGFSI 342
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 506 YDPIGHCARHNFRAGGSAAAQLQPLLDN 589
Y+P+ + A H FR G S + L+ + N
Sbjct: 332 YEPLFNTASHGFRPGRSCHSALRSIFTN 359
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = +3
Query: 57 FFHKNHTKC*ALTRTFLNMLCLVRNSIVSSPTRTTEVVL*PSPAMIMPLSEQTLVSAL 230
F+H+++ L+RTF + + N + + T T+ P P ++ LS++ + L
Sbjct: 23 FYHQHYEHTGKLSRTFFSPTHIKYNRLSTLDTSTSTANAAPDPQVLTFLSKRMQAAPL 80
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 347 RMQMYEHEHNKSMTTPAVAQMLSTMLYYKR 436
R Q ++NK M T A M TM+++KR
Sbjct: 666 RWQFRTIKNNKDMQTKAKRAMRETMVFWKR 695
>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
factor |Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 542 RAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLP 637
+AG S A + LL+NQI +N+T + P
Sbjct: 540 KAGHSEAIERLALLENQIQEPEPENITSSQYP 571
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 123 PGTAYSGKFSLTLNILYDFYGKISFIRFEI 34
PG + +GKF ++ D YGKI+ ++ I
Sbjct: 125 PGLSKAGKFPSPVSHADDLYGKITEVKSTI 154
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 13 CMSLDSKYFEANKTNFS 63
CM L +KY +N+TN S
Sbjct: 228 CMDLHNKYLPSNQTNIS 244
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.0 bits (52), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 461 VLAGLDSDGKGCVYSY 508
VL G D DG+ C+Y Y
Sbjct: 686 VLLGYDKDGRPCLYLY 701
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.2
Identities = 14/62 (22%), Positives = 27/62 (43%)
Frame = +2
Query: 104 PEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSES 283
P A+P + D + I GDD + ++T S+Y+ + K+F+ ++
Sbjct: 346 PLQALPPLPLEKLYGSQDGFETAKKIVGDDLFKAFVPSAVTTASSLYSEETAKVFRAEQA 405
Query: 284 TV 289
V
Sbjct: 406 EV 407
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.2
Identities = 21/73 (28%), Positives = 29/73 (39%)
Frame = +2
Query: 356 MYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARH 535
++ E S TPAV + + P VS VL G+DS + V P+ R
Sbjct: 105 LFGREKQNSEATPAVQPPATCPMSNSNQKPAGVSEVLTGVDSKQQSYVPEGCPVATPKRG 164
Query: 536 NFRAGGSAAAQLQ 574
F G+ Q Q
Sbjct: 165 WFNWFGNNDDQKQ 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,090
Number of Sequences: 5004
Number of extensions: 58148
Number of successful extensions: 196
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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