Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b06f
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)        239   2e-63
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   76   3e-14
SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)                  33   0.20 
SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)              29   3.2  
SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)                   28   5.6  
SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)                    28   7.4  
SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  27   9.7  
SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score =  239 bits (584), Expect = 2e-63
 Identities = 110/189 (58%), Positives = 140/189 (74%)
 Frame = +2

Query: 74  YKMLSVNENFPEYAVPGAKQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRD 253
           Y +  +      Y     KQ  F PYA NGG+++AI+G+D+AVI +DTRLS GF I+TRD
Sbjct: 58  YSLTKMQVGSESYYGGNPKQTYFSPYAFNGGTVLAISGEDFAVIASDTRLSQGFQIHTRD 117

Query: 254 QKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYK 433
             K++KL+ STVLG +G   D LTLT+ + AR+QMYEH+H K+M+  A+AQMLSTMLYY+
Sbjct: 118 SPKVYKLTGSTVLGCSGFHGDCLTLTKHISARLQMYEHDHGKAMSCTAIAQMLSTMLYYR 177

Query: 434 RFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQ 613
           RFFPYY  N+LAGLDS+GKGCV+S+DP+G   R  +RAGGSA+A LQPLLDNQIG KN +
Sbjct: 178 RFFPYYTYNILAGLDSEGKGCVFSFDPVGSYEREVYRAGGSASALLQPLLDNQIGFKNQE 237

Query: 614 NVTEAPLPR 640
            V   PL R
Sbjct: 238 GVPHTPLTR 246


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)
 Frame = +2

Query: 158 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 337
           NG +I+A+ G +   I AD RL       + D +K+F++ E   +G  G   D  T++  
Sbjct: 77  NGAAIIAMVGKNCVAIAADRRLGIQAQTVSCDFQKIFQMGEKLFVGLPGLATDVQTISSR 136

Query: 338 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLD-SDGKGCVYSYDP 514
           L+ R+ +YE    + +       M+S +LY +RF PY+V  V+AGLD    +  + S D 
Sbjct: 137 LKFRLNLYELREGRPIKPKTFLSMVSNLLYERRFGPYFVEPVIAGLDPKTNEPFISSMDL 196

Query: 515 IG-HCARHNFRAGGSAAAQLQPLLDN 589
           IG      +F   G+ + Q+  + ++
Sbjct: 197 IGCPMETKDFVVSGTCSEQMYGMCES 222


>SB_10931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/92 (22%), Positives = 47/92 (51%)
 Frame = +2

Query: 155 DNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTR 334
           D+G + +A       ++  D+R + G  I ++  KK+ +++   +    G   D     R
Sbjct: 26  DHGTTTLAFKFKHGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCSFWER 85

Query: 335 LLQARMQMYEHEHNKSMTTPAVAQMLSTMLYY 430
           LL  + ++YE  + + ++  A +++L+ M+YY
Sbjct: 86  LLAKQCRIYELRNKERISVAAASKILANMVYY 117


>SB_48652| Best HMM Match : RVT_1 (HMM E-Value=0.0009)
          Length = 938

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/64 (26%), Positives = 36/64 (56%)
 Frame = +2

Query: 161  GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
            G S++ I  +   ++ ADT  S G     R+  +L +++E+T++GA G + D   +  +L
Sbjct: 875  GTSVLGIKFNGGVLMAADTLGSYGSLARYRNISRLMRVNENTIIGAAGDYADFQYIKSVL 934

Query: 341  QARM 352
            + ++
Sbjct: 935  EQKV 938


>SB_6320| Best HMM Match : Exo_endo_phos (HMM E-Value=4.8)
          Length = 845

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 VAIAGD--DYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
           VA+  D  D   +GAD R   G +IY RD   + ++  S    A  C C TL L
Sbjct: 249 VALEADLRDRGWLGADLRSKGGVAIYVRDTISVIEIKRSE---AYECLCVTLDL 299


>SB_50142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 420 IVESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPV 298
           +V +  A + +V+ LL SC  +C L+  R +KV   HQ+ +
Sbjct: 165 MVSTAKAYSVIVLFLLVSCFLLCFLSYFRLLKVTRRHQRQI 205


>SB_23884| Best HMM Match : IBN_N (HMM E-Value=0.092)
          Length = 230

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 312 HQQPVAPNTVLSDNLNSFFWSLVYMENPVLRRVSAP 205
           +Q+   P+ VLS N   +   LV ++ PVL++V+AP
Sbjct: 28  YQKLKTPHVVLSVNRFFYLRDLVMIQIPVLQKVAAP 63


>SB_6030| Best HMM Match : rve (HMM E-Value=8.7e-30)
          Length = 1280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +3

Query: 393  RQSHRCSQLCCITNDFSHTTYPTCWRVWTATVRDVYIVTTLSDTVRAITSAL 548
            R+   C+QL   T  F+++ +    R+W     DV  + TL+    A+  A+
Sbjct: 1217 RKELYCNQLQANTLTFNYSFFARAIRIWNLLPNDVKSINTLAKYKAAVQPAV 1268


>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -2

Query: 390 VVIDLLCSCSYICILACRRR--VKVNVSHQQPVAPNT 286
           V ++L+C  SY+ + +C  R  ++ N  H  P    T
Sbjct: 428 VSLELVCCYSYVMVSSCSERCTIRYNAMHNNPCLSRT 464


>SB_6455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 242 YTRDQKKLFKLSESTVLGATGCWCDTLTLT 331
           + + Q K+F    S V   TG WCD L ++
Sbjct: 25  WAKMQNKVFGPENSRVFRETGAWCDLLGMS 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,150,338
Number of Sequences: 59808
Number of extensions: 462925
Number of successful extensions: 1257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)