Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b06f
(640 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 144 6e-35
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 144 6e-35
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 82 4e-16
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 59 3e-09
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 28 6.5
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 28 6.5
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 28 6.5
U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl prote... 27 8.6
AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl pro... 27 8.6
AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical... 27 8.6
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 144 bits (348), Expect = 6e-35
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
Frame = +2
Query: 128 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 304
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 305 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 484
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 485 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP 631
GKG V+SYDPIG R + A G+A + P LD QIG + E P
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERP 208
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 144 bits (348), Expect = 6e-35
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 1/169 (0%)
Frame = +2
Query: 128 KQHRFEPYADNGGSIVAIAGDDYAVIGADTRLSTG-FSIYTRDQKKLFKLSESTVLGATG 304
++ R+ PY+ GGS AI+G+++A++ +DTR++ +I TRD +K+ L+++ +L +G
Sbjct: 40 ERQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSG 99
Query: 305 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 484
+ D L L ++LQ+R+ Y ++ M+ A++LS LYY+RFFPYY +LAG+D
Sbjct: 100 FYGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEH 159
Query: 485 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAP 631
GKG V+SYDPIG R + A G+A + P LD QIG + E P
Sbjct: 160 GKGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLSEGYERP 208
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 81.8 bits (193), Expect = 4e-16
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 1/144 (0%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
GG++VA+AGD+ I +D R+ + DQKK+ K+++ +G G D T+ +
Sbjct: 8 GGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEKI 67
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
R +YE N+++ +++M+S + Y RF Y+ ++AGLD K + D IG
Sbjct: 68 MFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTIG 127
Query: 521 -HCARHNFRAGGSAAAQLQPLLDN 589
A +F A G+ L + +N
Sbjct: 128 CVSAPRDFVAVGTGQEYLLGVCEN 151
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 58.8 bits (136), Expect = 3e-09
Identities = 39/144 (27%), Positives = 70/144 (48%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +++A+ + V+G D+R S G I +R K+ ++++ V+ +G DT + +
Sbjct: 23 GTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAADTQAIADIA 82
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
+ + +Y NK +T +Q+ LY R S ++AG D + G VY+ G
Sbjct: 83 KYHIDVYTMTENKPVTIYRSSQIFRQFLYNYR-EQLSASVLVAGWDEELGGQVYAIPIGG 141
Query: 521 HCARHNFRAGGSAAAQLQPLLDNQ 592
+R A GS + +Q LD+Q
Sbjct: 142 FVSRQRSTASGSGSTFVQGFLDSQ 165
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +IVA+A V+GAD+R + G I + +K+ KL+ES G D +T++L
Sbjct: 46 GTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKVHKLTESIYACGAGTAADLDQVTKML 105
Query: 341 QARMQMYE-HEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
+++ E + K+ A+ Q + Y+ + Y+ ++ G+D G +Y
Sbjct: 106 SGNLRLLELNTGRKARVITALRQAKQHLFNYQGYIGAYL--LIGGVDPTGPH-LYMCSAN 162
Query: 518 GHCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEAPLPR 640
G F A GS + +L+ + ++ E + R
Sbjct: 163 GTTMAFPFTAQGSGSYAAITILERDFKVDMTKDEAEKLVQR 203
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 44.8 bits (101), Expect = 5e-05
Identities = 31/130 (23%), Positives = 56/130 (43%)
Frame = +2
Query: 200 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 379
++ D+R S+G I ++ K+ + + V G D TR++ +YE
Sbjct: 84 IVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAADCQFWTRIVAKYCTLYELREKT 143
Query: 380 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 559
S+T A ++ + LY R V +++AG D G ++ D G + + GS
Sbjct: 144 SITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ-IFKVDSEGDRCQLKVCSVGSG 202
Query: 560 AAQLQPLLDN 589
+ +LDN
Sbjct: 203 SLNAYGILDN 212
>Z73423-1|CAA97776.2| 492|Caenorhabditis elegans Hypothetical
protein C03A3.2 protein.
Length = 492
Score = 30.3 bits (65), Expect = 1.2
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Frame = -2
Query: 639 LGKGASVTFCIFFKPI*LSRSGCSCAAAEPPARKLWRAQCPIGS*LYT----HPLPSLSK 472
L + A+ I + LS G AAA PPA G +Y H +PSL
Sbjct: 207 LSRWAAFILMISLATMQLSSDG---AAAHPPAYNFHGFGSLFGCAVYAFMCHHSIPSLIT 263
Query: 471 PANTLDT*YGKNRL*YNIV 415
P T D +GK L Y +V
Sbjct: 264 PMRTKDNVFGKIALVYGVV 282
>Z77662-7|CAB01197.1| 349|Caenorhabditis elegans Hypothetical
protein F47B8.7 protein.
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 417 VESICATAGVVIDLLCSCSYICILACRRRVKVNVSHQQPVAPNT-VLSDNLN-----SFF 256
V SI + V+ L+ S + ++ C ++ + V + + N VL +N FF
Sbjct: 218 VGSIMSAVAYVLTLILSI--LVMILCTIKINLKVRESKNSSNNLLVLQKKMNRVLLAQFF 275
Query: 255 WSLVYMENPVLRRVSAPITA*SSPAMATILPPLSA 151
L++++ P V PI S + +LP L A
Sbjct: 276 CPLIFIQAPFYYSVLGPIVGLSQGLVTDLLPLLFA 310
>Z70212-5|CAA94165.3| 320|Caenorhabditis elegans Hypothetical
protein R04D3.7 protein.
Length = 320
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 68 KSYKMLSVNENFPEYAVPGAKQHRFEPYADNG 163
KSY+ S+N+N EY+V G + F P + NG
Sbjct: 159 KSYE--SINKNLEEYSVIGIMNYSFLPSSING 188
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 337 YTKTQLKMAKVSLSNMLGSVGYW 359
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 334 YTKTQLKMAKVSLSNMLGSVGYW 356
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 242 YTRDQKKLFKLSESTVLGATGCW 310
YT+ Q K+ K+S S +LG+ G W
Sbjct: 341 YTKTQLKMAKVSLSNMLGSVGYW 363
>U50313-5|AAA92329.1| 270|Caenorhabditis elegans Palmitoyl protein
thioesteraseprotein 1 protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 545 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 441
+ Y A G ++ +RCPNPP + + S+G
Sbjct: 70 KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>AY691522-1|AAU01161.1| 254|Caenorhabditis elegans palmitoyl
protein thioesterase protein.
Length = 254
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 545 RGSYGAHSVR*GRNYIHIPYRRCPNPPTRWIRSMG 441
+ Y A G ++ +RCPNPP + + S+G
Sbjct: 70 KNGYNAIGFSQGAQFLRAVAQRCPNPPMKNLVSVG 104
>AC024859-27|AAK29978.4| 337|Caenorhabditis elegans Hypothetical
protein Y71H2AM.1 protein.
Length = 337
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 380 ICYARVRTSASSLVEDASRLMCHTSSQSLPIL 285
+C++ T + L+E R M HTSS+ L I+
Sbjct: 231 LCFSLQETVFAMLIEITERAMAHTSSKELLIV 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,564,506
Number of Sequences: 27780
Number of extensions: 335415
Number of successful extensions: 1079
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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