Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b06f
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 95  ENFPEYAVPGAKQHR 139
           EN+P Y + GAKQ +
Sbjct: 80  ENYPHYQMSGAKQKK 94


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 114 LCLVRNSIVSSPTRTTEVVL*PSPAMIMPLSEQTL 218
           LC+V NS+      T   V  P  A I P S QT+
Sbjct: 286 LCIVNNSVGGESVETVLTVTAPLGAEIEP-STQTI 319



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 491  PYRRCPNPP 465
            P RRCP PP
Sbjct: 1697 PNRRCPPPP 1705


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 164 GSIVAIAGDDYAVIGA 211
           G I+A  GD + VIGA
Sbjct: 102 GIIIAYTGDVHGVIGA 117


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 49  YSLRNTSNRVTCT 11
           Y+LRN   R+ CT
Sbjct: 206 YTLRNYGRRINCT 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,244
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)