Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b06f
(640 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1) 182 1e-46
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (... 73 1e-13
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) id... 72 4e-13
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 50 1e-06
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P... 48 7e-06
At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative... 46 2e-05
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 46 2e-05
At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1) (... 46 3e-05
At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2) (P... 37 0.013
At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2) (P... 37 0.013
At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1) id... 36 0.017
At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1) id... 36 0.017
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 32 0.28
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 32 0.28
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 32 0.37
At4g26920.1 68417.m03874 hypothetical protein 29 2.0
At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-... 29 2.6
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 29 3.4
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 29 3.4
At3g09140.1 68416.m01075 expressed protein contains Pfam profile... 28 6.0
At2g28100.1 68415.m03413 glycosyl hydrolase family 29 / alpha-L-... 28 6.0
At2g33240.1 68415.m04072 myosin, putative similar to myosin (GI:... 27 7.9
At1g21060.1 68414.m02634 expressed protein contains Pfam profile... 27 7.9
>At3g60820.1 68416.m06804 20S proteasome beta subunit F1 (PBF1)
Length = 223
Score = 182 bits (444), Expect = 1e-46
Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Frame = +2
Query: 128 KQH-RFEPYADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATG 304
KQH + PY +NGG+ VAIAG DY VI ADTR+STG+SI +RD K+ KL++ VL ++G
Sbjct: 3 KQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSG 62
Query: 305 CWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSD 484
D L ++L++R +Y+H+HNK M+ PA+AQ+LS LY+KRFFPYY NVL GLD +
Sbjct: 63 FQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEE 122
Query: 485 GKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 595
GKGCV++YD +G R + A GS + + P LDNQ+
Sbjct: 123 GKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQL 159
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1)
(PRCT) almost identical to GB:AAC32069 from [Arabidopsis
thaliana], EST gb|T76747 comes from this gene; identical
to cDNA proteasome subunit prct GI:2511567
Length = 204
Score = 73.3 bits (172), Expect = 1e-13
Identities = 38/121 (31%), Positives = 61/121 (50%)
Frame = +2
Query: 158 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 337
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQR 66
Query: 338 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
L R ++Y+ + M A ++S +LY KRF PY V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSI 126
Query: 518 G 520
G
Sbjct: 127 G 127
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2)
identical to residues 14-204 of 20S proteasome beta
subunit PBC2 GB:AAC32069 [Arabidopsis thaliana]
Length = 204
Score = 71.7 bits (168), Expect = 4e-13
Identities = 37/121 (30%), Positives = 61/121 (50%)
Frame = +2
Query: 158 NGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRL 337
NG ++VA+ G + I +D RL D +++ K+ + +G +G D TL +
Sbjct: 7 NGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQR 66
Query: 338 LQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
L R ++Y+ + M A ++S +LY KRF P+ V+AGL D K + + D I
Sbjct: 67 LVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSI 126
Query: 518 G 520
G
Sbjct: 127 G 127
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 50.0 bits (114), Expect = 1e-06
Identities = 32/142 (22%), Positives = 62/142 (43%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G +I+ + + V+GAD+R STG + R K+ +L+++ + +G D+ ++ +
Sbjct: 12 GTTIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 71
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
+ + + +H + T A ++ ML Y ++ G D G +Y G
Sbjct: 72 RYFLHQHTIQHGQPATVKVSANLI-RMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGG 130
Query: 521 HCARHNFRAGGSAAAQLQPLLD 586
F GGS ++ L D
Sbjct: 131 TVVEQPFAIGGSGSSYLYGFFD 152
>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
(PRGB) identical to GB:CAA74026 from [Arabidopsis
thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
identical to cDNA proteasome subunit prgb GI:2511589
Length = 204
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Frame = +2
Query: 170 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 349
+ + G+ +A++ ADT ++ ++ K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 350 MQMYEHEHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
+ +Y+ + +TT A A L R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYI 120
>At3g26340.1 68416.m03286 20S proteasome beta subunit E, putative
very strong similarity to SP|O23717 Proteasome subunit
beta type 5 precursor (EC 3.4.25.1) (20S proteasome
subunit E) (Proteasome epsilon chain) {Arabidopsis
thaliana}
Length = 273
Score = 46.4 bits (105), Expect = 2e-05
Identities = 38/156 (24%), Positives = 70/156 (44%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G + +A + ++ AD+R S G I ++ KK+ +++ + G D R L
Sbjct: 57 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 116
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIG 520
+ +++E + + ++ +++L+ MLY R V ++AG D G G Y + G
Sbjct: 117 GIKCRLHELANKRRISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGG 176
Query: 521 HCARHNFRAGGSAAAQLQPLLDNQIGLKNMQNVTEA 628
F GS + +LD+ G K +V EA
Sbjct: 177 RLKGDRFSV-GSGSPYAYGVLDS--GYKFDMSVEEA 209
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Frame = +2
Query: 170 IVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQAR 349
+ + G+ +A++ ADT ++ + K+ L ++ A+G D + T +Q
Sbjct: 4 VFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKN 63
Query: 350 MQMYEHEHNKSMTTPAVAQMLSTMLYYK-RFFPYYVSNVLAGLDSDGKGCVYSYDPI 517
+ +Y+ + ++T A A L R PY V+ ++AG D + +Y D I
Sbjct: 64 VSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYI 120
>At1g13060.1 68414.m01514 20S proteasome beta subunit E1 (PBE1)
(PRCE) identical to GB:O23717; identical to cDNA
proteasome subunit prce GI:2511595
Length = 274
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/143 (25%), Positives = 65/143 (45%)
Frame = +2
Query: 200 VIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNK 379
++ AD+R S G I ++ KK+ +++ + G D R L + +++E + +
Sbjct: 70 MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 129
Query: 380 SMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSA 559
++ +++L+ MLY R V ++AG D G G Y + G F GS
Sbjct: 130 RISVSGASKLLANMLYSYRGMGLSVGTMIAGWDETGPGLYYVDNEGGRLKGDRFSV-GSG 188
Query: 560 AAQLQPLLDNQIGLKNMQNVTEA 628
+ +LD+ G K +V EA
Sbjct: 189 SPYAYGVLDS--GYKYDMSVEEA 209
>At5g40580.2 68418.m04925 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/113 (19%), Positives = 53/113 (46%)
Frame = +2
Query: 149 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 329 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 487
T ++ ++++++ ++ + +L L+ + + VL G+D G
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITG 146
>At5g40580.1 68418.m04924 20S proteasome beta subunit B (PBB2)
(PRCFC) identical to 20S proteasome beta subunit PBB2
[Arabidopsis thaliana] GI:3421104, cDNA proteasome
subunit prcfc GI:2511575
Length = 274
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/113 (19%), Positives = 53/113 (46%)
Frame = +2
Query: 149 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 329 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 487
T ++ ++++++ ++ + +L L+ + + VL G+D G
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVVTALTLLKKHLFSYQGH-VSAALVLGGVDITG 146
>At3g27430.2 68416.m03429 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 273
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/113 (19%), Positives = 53/113 (46%)
Frame = +2
Query: 149 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 329 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 487
T ++ ++++++ ++ + +L L+ + + VL G+D G
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITG 146
>At3g27430.1 68416.m03428 20S proteasome beta subunit B (PBB1)
identical to 20S proteasome beta subunit PBB1 (PBB1)
GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2),
677-692 (1998)); contains Pfam profile: PF00227
proteasome A-type and B-type;
Length = 267
Score = 36.3 bits (80), Expect = 0.017
Identities = 22/113 (19%), Positives = 53/113 (46%)
Frame = +2
Query: 149 YADNGGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTL 328
+ G +IV + D ++GADTR + G + ++ +K+ ++ + G DT +
Sbjct: 35 FLKTGTTIVGLIFKDGVILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAV 94
Query: 329 TRLLQARMQMYEHEHNKSMTTPAVAQMLSTMLYYKRFFPYYVSNVLAGLDSDG 487
T ++ ++++++ ++ + +L L+ + + VL G+D G
Sbjct: 95 TDMVSSQLRLHRYQTGRDSRVITALTLLKKHLFSYQGH-VSAALVLGGVDITG 146
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Frame = +2
Query: 263 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 436
LF +++ L ATG D +L + + + + + M +A+ ++ + +Y +
Sbjct: 69 LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQH 128
Query: 437 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 595
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Frame = +2
Query: 263 LFKLSESTVLGATGCWCDTLTLTRLLQARMQMYEHEHNKSMTTPAVAQMLS--TMLYYKR 436
LF +++ L ATG D+ +L + + + ++ M +A+ ++ + +Y +
Sbjct: 69 LFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQH 128
Query: 437 FF--PYYVSNVLAGLDSDGKGCVYSYDPIGHCARHNFRAGGSAAAQLQPLLDNQI 595
+ P V ++ G+D + +Y DP GH H + G + L+ ++
Sbjct: 129 AYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKM 183
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/41 (31%), Positives = 27/41 (65%)
Frame = -2
Query: 384 IDLLCSCSYICILACRRRVKVNVSHQQPVAPNTVLSDNLNS 262
+++L +C C LA R R ++N++H+QP P+ +++ L +
Sbjct: 1122 LEILVTCKR-CYLA-RARSQININHRQPTTPSVLINGQLQN 1160
>At4g26920.1 68417.m03874 hypothetical protein
Length = 461
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 404 QMLSTMLYYKRFFPYYVSNV 463
+ML+ YY RFFP+Y NV
Sbjct: 93 EMLTLNEYYSRFFPWYAKNV 112
>At1g63990.1 68414.m07248 DNA topoisomerase VIA, putative (SPO11-2)
similar to topoisomerase 6 subunit A (spo11)
[Arabidopsis thaliana] GI:12331186; contains Pfam
profile PF04406: Type IIB DNA topoisomerase; identical
to cDNA putative topoisomerase VIA (SPO11 gene 2)
GI:7270976
Length = 383
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 238 GKSSAETSVCSDNGIIIAGD-GYNTTSVVRVGLETMLFRTRHSIFRKVL 95
GK + + S C +G I GD +++R ++ +H+IF +++
Sbjct: 178 GKEAVDCSACGSSGFAITGDLNLLDNTIMRTDARYIIIVEKHAIFHRLV 226
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 28.7 bits (61), Expect = 3.4
Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 502
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 503 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQ 592
+ P G+ + A GS + + L+ +
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERR 175
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 28.7 bits (61), Expect = 3.4
Identities = 29/150 (19%), Positives = 61/150 (40%), Gaps = 6/150 (4%)
Frame = +2
Query: 161 GGSIVAIAGDDYAVIGADTRLSTGFSIYTRDQKKLFKLSESTVLGATGCWCDTLTLTRLL 340
G + + + + V+ + + S + Q+K+FK+ + + G D L+R +
Sbjct: 32 GSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVAIAGLTADGRVLSRYM 88
Query: 341 QARMQMYEHEHNKSMTTPAVAQMLS------TMLYYKRFFPYYVSNVLAGLDSDGKGCVY 502
++ + + + + L+ T +KR PY V ++ GLD G Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKR--PYGVGLLVGGLDESGAHLYY 146
Query: 503 SYDPIGHCARHNFRAGGSAAAQLQPLLDNQ 592
+ P G+ + A GS + + L+ +
Sbjct: 147 NC-PSGNYFEYQAFAIGSRSQAAKTYLERK 175
>At3g09140.1 68416.m01075 expressed protein contains Pfam profile
PF05056: Protein of unknown function (DUF674);
expression supported by MPSS
Length = 473
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -2
Query: 366 CSYICILACRRRVKVNVSHQQPVAPNTVLSDNLNSFF 256
CS+ C++ + + P PN++ N N FF
Sbjct: 371 CSFKCVVETNNEYDFKFTRKMPPRPNSLKEKNQNMFF 407
>At2g28100.1 68415.m03413 glycosyl hydrolase family 29 /
alpha-L-fucosidase, putative similar to
alpha-L-fucosidase SP:P10901 from [Dictyostelium
discoideum]
Length = 506
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 229 WIFHIYQRPKKAVQII*EY--SIGSDWLLV*HINLDASSTSEDADVR 363
W +H + PK AVQ++ Y S+G + L + ++ ++S + D++
Sbjct: 285 WFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISEQDIK 331
>At2g33240.1 68415.m04072 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin my5A
(SP:Q02440) {Gallus gallus}
Length = 1770
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 632 KELLLHSAYSLSQFDCRGAVAAVQQRNHQRGSYGAHSVR*GRNYI 498
K LLL SA + Q CRG +A VQ + +R + + R YI
Sbjct: 770 KYLLLQSASTEIQAFCRGHIARVQFKATRREAASVRIQKQARTYI 814
>At1g21060.1 68414.m02634 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 505
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Frame = -2
Query: 420 IVESICATAGVVIDLL-CSCSYICILACRRRVKVNVSHQQPVAPNTVLS----DNLNS 262
IV++I + + D+L C CS C L+ + R+ + P +P++V S D+LNS
Sbjct: 180 IVDNIANPSRLSEDILRCICSVYCTLSSKARIN-SCLQASPSSPSSVSSKATFDSLNS 236
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,475,115
Number of Sequences: 28952
Number of extensions: 304389
Number of successful extensions: 777
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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