Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05r
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)                  28   8.5  

>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = -1

Query: 326 Y*IHCSLNLICVI*IPLRPCKYYYVQH*LLIN*LSHTNLYLCIVCQF 186
           Y +H S+ +  +  +  R C+YYY  H L I  +S+ +L LC  C++
Sbjct: 592 YVVHLSITVSYISLLLCRACRYYYFVH-LAIT-VSYISLLLCRACRY 636



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -1

Query: 368 IWIQVHKLIRTTITY*IHCSLNLICVI*IPLRPCKYYYVQH*LLIN*LSHTNLYLC 201
           I + +++ IR    Y +H ++ + C   +  R C+YYY  H  +   +S  +L LC
Sbjct: 465 ILLSLYRAIRCY--YVVHVAITISCKSLVLCRACRYYYFVHVAIT--MSCISLLLC 516



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -1

Query: 326 Y*IHCSLNLICVI*IPLRPCKYYYVQH*LLIN*LSHTNLYLCIVCQF 186
           Y +H ++ + C++    R  + YYV H  +   +S  +L LC  C++
Sbjct: 454 YIVHLAITMSCILLSLYRAIRCYYVVHVAIT--ISCKSLVLCRACRY 498


>SB_43974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 309 IESNLCDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSVQITLLNSL 163
           IE+N+ D N F TM  L  +++ + K++        +S  +   + NSL
Sbjct: 819 IEANMADPNKFNTMLALSYASVFLVKIVFSMCAFLSFSTHISEVITNSL 867


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 560 TESYCHLWCLKLTDSFCKRRNNDLILIHVIG 468
           T   C LW ++LT +  +   +DL++ H +G
Sbjct: 113 TREQCPLWKIELTYNKSRFAESDLVIFHALG 143


>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
          Length = 925

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -2

Query: 571 LYTRLNRIVTFGVSS*LIVFVNDETMI*F*SMSLAKYEVY 452
           +++ L  + TFG+ S L+VFVN  ++I F    +  YE+Y
Sbjct: 381 VFSPLLGVSTFGIFSALLVFVNYCSVITFFPTVVITYELY 420


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,202,339
Number of Sequences: 59808
Number of extensions: 363916
Number of successful extensions: 636
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)