Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05r
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>AC090999-7|AAK26142.1|  438|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.12 protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 414 IAIRSITPYCNIKYTSYLANDMDQNQIIVSSFTKTISQLETPKVTIR 554
           IAI+ +    N   T +L  D D  Q  +++F KT+ + +   V IR
Sbjct: 195 IAIKDLETVMNHVSTLFLTIDADAQQGFITTFRKTLKESKCVNVRIR 241


>Z71178-3|CAA94876.2|  254|Caenorhabditis elegans Hypothetical
           protein B0024.3 protein.
          Length = 254

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 255 RSTLIVNKLIKPHEPLFMYSLSVQITLLNSLI*FMVSKLATISNFGYFWKS 103
           RST+  +     H P+F +SL+      N+LI   +++  T  N  Y+W S
Sbjct: 84  RSTIFASLYSHAHSPIFSHSLT------NALIISSLARPITYDNRQYYWDS 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,303
Number of Sequences: 27780
Number of extensions: 297116
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)