Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05r
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.93 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 25  ALSNKWLGNENVSNLCRYKINGTNYN 102
           +LSNK + N N  N   Y  N  NYN
Sbjct: 317 SLSNKTIHNNNNYNNNNYNNNYNNYN 342


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 390 TIFNID*IIAIRSITPYCNIKYTSYLANDMDQNQII 497
           T+FN +   A RS  P+   + +  +A  MD+N ++
Sbjct: 285 TLFNENSEAAARSFVPFSIERSSQSVAEVMDRNGVL 320


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 294  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 187
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1889 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 294  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 187
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1885 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1919


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 702 KPKSLKGIEYEPDN 661
           KP++ KGI  EP N
Sbjct: 553 KPETSKGINAEPSN 566


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,995
Number of Sequences: 438
Number of extensions: 4090
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)