Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05r
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-...    27   9.2  

>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
           / HD-ZIP transcription factor 10 / homeobox protein
           (GLABRA2) identical to homeobox protein (GLABRA2)
           (homeobox-leucine zipper protein ATHB-10) (HD-ZIP
           protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
          Length = 747

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 339 DNNHLLDSLFIESNLCDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSVQITLLN 169
           D  H L SL   + +  +   +  +I  R+TL + K+    EP+++ S+     +LN
Sbjct: 235 DQEHRLGSLDFYTGVFALEKSRIAEISNRATLELQKMATSGEPMWLRSVETGREILN 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,258
Number of Sequences: 28952
Number of extensions: 261874
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)