Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05f
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    29   0.043
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.53 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   1.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   1.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.6  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.7  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 0.043
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = +3

Query: 291 YPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVP 467
           +PY+ ++Y DP  AA  I       LP+H       P P+Y H+Y R   Y  P + VP
Sbjct: 135 WPYA-AVYTDPAFAAS-IFHAAATSLPLHYP----PPPPVYTHHYARYHPY--PNFGVP 185


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +3

Query: 222 EDIRAEERYRPTRRSVF--PELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGY 395
           E+IR + R  PT    +  P + +T P     ++D +A  ER+ +PG  +    R  + Y
Sbjct: 22  ENIR-DRRVLPTVEPGYLRPLIPATAPQKPDKWEDVMADIERVIMPGVTHWHSPR-FHAY 79

Query: 396 SPRPIYAHNYP 428
            P    A++YP
Sbjct: 80  FPT---ANSYP 87


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 SLRRPQGMAGPSRQAGCHRPAVPISLRTLPKGPGLPH 601
           SL  P GM  PS       P+V ++   + + P  PH
Sbjct: 692 SLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPH 728


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 491 SLRRPQGMAGPSRQAGCHRPAVPISLRTLPKGPGLPH 601
           SL  P GM  PS       P+V ++   + + P  PH
Sbjct: 584 SLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPH 620


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 447 RPIYHVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRY-GLYLKDRA--YPITDF 611
           RP+  VPR + R VD     +   D +DR    DR+Y + + G+   D     P+T+F
Sbjct: 285 RPVNQVPRDLNREVDQI---RLSLDDMDRWR--DRIYDAIHSGVVRGDNGQNIPLTEF 337


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +2

Query: 326 RCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSRL---LQANLPRAKTRA 478
           RC   +    L  P CPS +  L     L   +P+LS +   L   LP A   A
Sbjct: 83  RCNSRESSDSLVQPRCPSGESMLSERAALLRGVPTLSPVGVALPPTLPAAAAAA 136


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 111 SCSYCVC*TNVTQIRCLLISTFNHKR 34
           SC+ C C     +I+C  I  +N K+
Sbjct: 773 SCTVCTCDAKYLEIKCKRI--YNEKQ 796


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 560 WVQPVDGSQPV 528
           WV P DG+ P+
Sbjct: 916 WVAPFDGNSPI 926


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 225 LPNLLENARRTAKIWLSSTASRFCQSCLNVF*TFWR 118
           LP   EN      I +S+   +   S  N F TFW+
Sbjct: 417 LPRYTENQLNYPGITVSNIEVQSQGSSKNTFNTFWQ 452


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,599
Number of Sequences: 336
Number of extensions: 3598
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)