Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b05f
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0674 - 21745321-21746223,21746229-21747608 35 0.064
07_03_1155 - 24413270-24413728 35 0.064
06_01_1181 + 10148653-10149405 33 0.26
11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960 31 0.59
07_03_0518 + 19007793-19008722 31 0.78
07_03_0512 - 18954515-18955972 31 1.0
07_03_0514 + 18984375-18985865 29 2.4
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 29 2.4
12_02_0168 + 14827529-14828050 29 4.2
10_08_0270 + 16378878-16380566 29 4.2
09_03_0006 + 11426346-11426420,11426733-11427452 29 4.2
08_01_1010 - 10215625-10216335,10216372-10216473 29 4.2
09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718 28 5.5
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714 28 5.5
04_04_0095 - 22775340-22776017 28 5.5
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683... 28 7.3
10_08_0739 + 20217842-20218852 28 7.3
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 28 7.3
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 28 7.3
01_01_1106 + 8750597-8754031 28 7.3
10_08_1040 + 22503641-22503681,22503838-22504299,22506952-225073... 27 9.7
07_03_0515 + 18992296-18993720 27 9.7
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117... 27 9.7
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 27 9.7
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 27 9.7
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 34.7 bits (76), Expect = 0.064
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Frame = +1
Query: 244 GTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTT 423
GT + + A PT+ T L + P+T + + STAT + S P T
Sbjct: 473 GTSELSTASTGELPSPTVKIPTTACTGELSTPTSQIPSTASTREL--STATGKIPSTPRT 530
Query: 424 ---TLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCT 558
+ A S I T + IPSTP+ + +TG +PST CT
Sbjct: 531 NPLSTATSKIPSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCT 578
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +1
Query: 385 STATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHL 564
+TA LS PT+ + + T + +T IPSTP + + +T +PST T L
Sbjct: 494 TTACTGELSTPTSQIPSTASTRELSTATGK-----IPSTPRTNPLSTATSKIPSTPRTSL 548
Query: 565 ATDS 576
+ S
Sbjct: 549 LSSS 552
>07_03_1155 - 24413270-24413728
Length = 152
Score = 34.7 bits (76), Expect = 0.064
Identities = 29/87 (33%), Positives = 33/87 (37%)
Frame = +2
Query: 374 PSRDLRLLPAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQGMAGPSRQAGCHRPA 553
P +L LP P L P LP L R + LP L +P+ P P
Sbjct: 46 PHPELPELPKPELPPPLPELPRPVVPELPPHPAVPELP-PLPKPELPPHPVVPEMLPHPV 104
Query: 554 VPISLRTLPKGPGLPHHRLYRTPHRPP 634
VP L P PG P H L P PP
Sbjct: 105 VP-ELPHYPAVPGFPKHGLPPKPELPP 130
>06_01_1181 + 10148653-10149405
Length = 250
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 357 YRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIYHVPRRVRRG 485
+RY+ VH +Y P+ + YP ++ P HV VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197
>11_06_0273 - 21810317-21810535,21810673-21810740,21810879-21810960
Length = 122
Score = 31.5 bits (68), Expect = 0.59
Identities = 28/96 (29%), Positives = 39/96 (40%)
Frame = +2
Query: 353 RLPLPACPSRDLRLLPAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQGMAGPSRQ 532
R+ LP S D R +PA L + + Q + R +WS S + P
Sbjct: 26 RVGLPGEFSGDQRPVPATSF--DLVTEPKTKQPRGVKGTRRPSWS-SWSSTASRSSPPPG 82
Query: 533 AGCHRPAVPISLRTLPKGPGLPHHRLYRTPHRPPXA 640
G A LR++P GP HH + +P RP A
Sbjct: 83 RGAPSAAAAAELRSVPAGPDPMHH--HGSPRRPEHA 116
>07_03_0518 + 19007793-19008722
Length = 309
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 494 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 366
G NST + WH V WP+ E+ + R GVAV++ +DR+
Sbjct: 198 GWNSTLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVEMEVDRK 243
>07_03_0512 - 18954515-18955972
Length = 485
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -3
Query: 494 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 372
G NST + WH +V WP+ E+ + R GVAV L +D
Sbjct: 369 GWNSTLESLWHGVPLVPWPLYAEQRLNAFELVRDMGVAVPLGVD 412
>07_03_0514 + 18984375-18985865
Length = 496
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 494 GINSTSHASWHVVD---WPVIIERARVVVGIDRARGVAVDLAMDRQ 366
G NS + WH V WP+ E+ + R GVAV L +DR+
Sbjct: 381 GWNSVLESLWHGVPMAPWPLYAEQHLNAFELVRDMGVAVPLGVDRE 426
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 203 HEGLPKSGFLRRRLVSANHV*MCFEHFGGLCRARIVFAE 87
H L + GF R +VS N + +C+ G +C AR +F E
Sbjct: 227 HNMLKRKGF-ERNVVSWNSMMICYIKAGDVCSARALFNE 264
>12_02_0168 + 14827529-14828050
Length = 173
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 558 GTAGRWQPACRDGPAMPCGRRR 493
G AGRW+ CR G + P GRRR
Sbjct: 22 GGAGRWR--CRSGRSAPGGRRR 41
>10_08_0270 + 16378878-16380566
Length = 562
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = -2
Query: 594 RPGPLGRVRSEMGTAGRWQPAC-----RDGPAMPCG 502
RPG +RSE+ T R AC RDGP+ CG
Sbjct: 352 RPGSAKSIRSELITQCRASSACSLMECRDGPSNKCG 387
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = +1
Query: 289 PTLTPSRFTT-TLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTC 465
P L P T T L PA + C + + + P M T ++LS + G + T
Sbjct: 161 PALRPMSLTRLTPFAALSTSTCPAAIACCAASTAVWNPNDRLM--TPMSLSAVFGIAATA 218
Query: 466 QDACDVELIPSTPT 507
+ ++PS+PT
Sbjct: 219 EPRHAPRIVPSSPT 232
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 28.7 bits (61), Expect = 4.2
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 1/109 (0%)
Frame = +1
Query: 226 TSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRA 405
++ PR+ P + R +P +T + P R P R+ +
Sbjct: 76 STPPRRAASPDYTPSTPTTPRRAASPD-YTPSTPTPPRRAASPDYTPSTPPPRAASPDYT 134
Query: 406 LSMPTTTL-ALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPST 549
S PT A S ST + A + PSTPT R S + PST
Sbjct: 135 PSTPTPPRRAASPNYTPSTPQRHAASPDYTPSTPTPPRRAASLDYTPST 183
>09_04_0396 + 17269928-17270344,17270455-17270517,17270635-17270718
Length = 187
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 548 PAVPISLRTLPK-GPGLPHHRLYRTPHRPPXA 640
PA P L + P+ P LP R R PH PP A
Sbjct: 3 PANPTPLLSSPRPNPSLPLPRRARRPHPPPAA 34
>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
Length = 411
Score = 28.3 bits (60), Expect = 5.5
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 545 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 450
D V V C++ + G+ T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310
>04_04_0095 - 22775340-22776017
Length = 225
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 597 GRPGPLGRVRSEMGTAGRWQPACRDGPAMPCGRRRDQLHVARVLARGRLACNN 439
G P +G V E+ RW+P R PA G + +RVLARG LAC +
Sbjct: 86 GAPASVGGVVFEL----RWRPR-RRSPAF-LGMLGNGRPSSRVLARGELACQD 132
>12_02_0019 -
12366259-12366819,12367653-12367685,12368294-12368363,
12368582-12368712,12369627-12369673,12369803-12369879,
12369963-12370027,12370105-12370191,12370300-12370389,
12370972-12371037,12371608-12371664,12371749-12371850,
12373018-12373554
Length = 640
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 398 PAPYLCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQ---GMAGPSRQAGCHRPAVPISL 568
P P P + R Q+++ ++W+ +L+ PQ G P+ + R + L
Sbjct: 59 PVPNAVPIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGL 118
Query: 569 RTLPKGP 589
R PKGP
Sbjct: 119 RLSPKGP 125
>10_08_0739 + 20217842-20218852
Length = 336
Score = 27.9 bits (59), Expect = 7.3
Identities = 20/72 (27%), Positives = 26/72 (36%)
Frame = +2
Query: 260 PQRFSRTPVDLPLLQVDLRRPYRCR*EDYGTRLPLPACPSRDLRLLPAPYLCPQLPSLSR 439
P S LP + P+R PLP PS L L+P+ P LP L+
Sbjct: 26 PSLISHLGAGLPAFAAGIHCPHR-------VSFPLPTAPSASLLLMPSWSAHPSLPYLAL 78
Query: 440 LLQANLPRAKTR 475
+ P R
Sbjct: 79 KAVTSFPANSPR 90
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 209 SKRFGRHQSRGKVQANTPQR-FSRTPVDLPLLQV-DLRRPYRCR 334
SKR +HQ+R T +R F R PV LP ++ +R P + +
Sbjct: 759 SKRIYKHQNRNNNNIRTKKRYFLRRPVRLPFKEILGIRIPVKVK 802
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 409 SMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGW 537
S T+TL+ + T ++ D + L P+T T GR +T W
Sbjct: 209 SPTTSTLSGRVTTTAWSSTSDVAFLPLPPTTSTLSGRVTTTAW 251
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +2
Query: 65 HLIWVTFVQQTQYEHDIDRQNVQNTFRHDWQKRDAVEE 178
HL+W++F+Q+ +HD+ ++ ++ R ++ D V +
Sbjct: 322 HLLWMSFLQEVD-QHDLSKKGLEVDGRVKYKIHDLVHD 358
>10_08_1040 +
22503641-22503681,22503838-22504299,22506952-22507361,
22507484-22507640,22507718-22507937,22508053-22508106,
22508193-22508272,22508359-22508636,22509193-22509515,
22509590-22509853,22510453-22510860
Length = 898
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -2
Query: 615 R*SR*WGRPGPLGRVRSEMGTAGRWQPACRDGPAMPCGRRRDQLHVARVLARGR 454
R R WGR G +GR R R +P G A GRRR + GR
Sbjct: 130 RWQRRWGRRGAVGRRRGR--RTARQRPGGDGGGAAAWGRRRWRAETPMQQVEGR 181
>07_03_0515 + 18992296-18993720
Length = 474
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -3
Query: 494 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMDRQ 366
G NST + W +V WP+ E+ + A GVAV + +DR+
Sbjct: 365 GWNSTLESLWFGVPMVPWPLYAEQHLNAFTLVAAMGVAVAMKVDRK 410
>03_01_0149 -
1175689-1176258,1176345-1176509,1176631-1177539,
1178179-1178378,1178505-1178605,1178747-1179369,
1179451-1179546,1179637-1179798,1179889-1180068,
1180173-1180323,1180408-1180641,1180753-1180913,
1181041-1181163,1181261-1181421,1181655-1181877,
1181952-1182346,1182461-1182671,1183536-1184522
Length = 1883
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 588 GPLGRVRSEMGTAGRWQPACRDGPAMPCG 502
G +G E A W AC DG ++ CG
Sbjct: 5 GGVGGGAGEHAAAAYWYDACEDGASLLCG 33
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 551 PVDGSQPVEMVLPCLVGVEGINSTSHASW 465
P GS ++ L CL G +G+N +SW
Sbjct: 482 PSAGSNAIQTALSCLEGNKGLNVKFSSSW 510
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 503 PQGMAGPSRQAGC--HRPAVPISLRTLPKGPGLPHHRLY 613
PQ + SR A C R AV +++TL K P ++RL+
Sbjct: 23 PQTITSGSRSAPCASERSAVDPAVKTLAKNPMFANNRLF 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,032,809
Number of Sequences: 37544
Number of extensions: 445757
Number of successful extensions: 1534
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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