Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05f
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.83 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              22   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.4  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
 Frame = +1

Query: 271 FPNSCRPTLTPSRFTTTLSLPLR----GLRYPATVTCLSIARSTATPRALSMPTTT 426
           F +SC P   P       S PL         PAT+T  +   +T T  A +  TTT
Sbjct: 75  FSSSCDPV--PGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTT 128



 Score = 22.6 bits (46), Expect = 3.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 400 RALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLAT 570
           +A S   +T A    TG +TT   A      P+TP+    T +     +TG T + T
Sbjct: 207 KAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPT 263


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = -2

Query: 558  GTAGRWQPACRDGPAMPCGRRRDQL-----HVARVLARG 457
            G AG WQ     GP +P     D+L     +  RV+A G
Sbjct: 948  GDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEG 986


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = -2

Query: 558  GTAGRWQPACRDGPAMPCGRRRDQL-----HVARVLARG 457
            G AG WQ     GP +P     D+L     +  RV+A G
Sbjct: 944  GDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEG 982


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 265 LRRVGLYLSSALMSSEPFRERT 200
           L++VG   +    + E FRERT
Sbjct: 67  LKKVGFVNADTTFNEEKFRERT 88


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 200 RAFSKRFGRHQSRGKVQANTPQRFSRTPVDLP 295
           +AF+++   + S GK+ A  P  FS      P
Sbjct: 337 KAFARKKTDYSSFGKILATEPTLFSNVTPKFP 368


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = -3

Query: 572  SVARWVQPVDGSQPVEMVLPCLVGVEGIN----STSHASWHVVDWPVIIERARVVVGIDR 405
            S+ +  +P+       + LP   G   +N     T+   W ++D   + +R      +D 
Sbjct: 1054 SMEKGTRPMIPDDNTSLALPKNEGPFRLNVETAKTNEEMWELIDTEKLTDRLPYPWTMDN 1113

Query: 404  ARGVAVDLAMD 372
             R V VD+ M+
Sbjct: 1114 ERYVKVDMYMN 1124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,880
Number of Sequences: 438
Number of extensions: 4390
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)