Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b05f
(646 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r... 30 1.1
At5g23910.1 68418.m02808 kinesin motor protein-related 29 3.5
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r... 29 3.5
At5g55540.1 68418.m06919 expressed protein 28 4.6
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 28 4.6
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 28 4.6
At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transfera... 28 4.6
At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putat... 28 6.1
At4g01090.1 68417.m00147 extra-large G-protein-related contains ... 28 6.1
At3g54990.1 68416.m06102 AP2 domain-containing transcription fac... 28 6.1
At3g44290.1 68416.m04756 no apical meristem (NAM) family protein... 27 8.1
>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1132
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -3
Query: 572 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 426
S+ W +PVD VEM+ L V+ S S W +WP+ ++ R
Sbjct: 293 SLGGW-EPVDAVAAVEMIKNQLADVKAFASKSKNGWS-YEWPLAVDEER 339
>At5g23910.1 68418.m02808 kinesin motor protein-related
Length = 665
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 304 SRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLAL 435
S+ T L L+G +TCL++ R T R + T T A+
Sbjct: 261 SKLTRMLKDCLKGSNITLLITCLTVLRGNVTERKTKINTATSAI 304
>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 572 SVARWVQPVDGSQPVEMVLPCLVGVEGINSTSHASWHVVDWPVIIERAR 426
S+ W +PVD + VEM+ L V+ S W +WP+ + R
Sbjct: 290 SIGSW-EPVDAAAAVEMIKNQLADVKAFASKCKNGWS-KEWPLAADEER 336
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -1
Query: 277 SGKTLRRVGLYLSSALMSSEPFRE----RTKDCQNLA 179
SGKT+ R G L+ L+S + FRE R D NLA
Sbjct: 1057 SGKTVLRAGFDLARNLLSDDDFREVLQRRYHDLHNLA 1093
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 180 LSSTASRFCQSCLNVF*TFWRSMSCSYC-VC*T 85
L+ A R C+ CL T WRS SC C +C T
Sbjct: 1052 LTPCAHRMCRECLL---TSWRSPSCGLCPICRT 1081
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +3
Query: 147 MIGRNETPSKKARFWQSFVRSLKGSEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPI 326
++ R E SK + Q +S + I A R + + +TY Y K Y+D +
Sbjct: 150 VVAREELMSKVHQLTQELQKSRSDVQQIPALMSELENLRQEYQQCRATYDYEKKFYNDHL 209
Query: 327 AAAERITVPGYRYLPVHREI 386
E + Y+ + RE+
Sbjct: 210 ---ESLQAMEKNYMTMAREV 226
>At1g07250.1 68414.m00771 UDP-glucoronosyl/UDP-glucosyl transferase
family protein similar to UDP-glucose
glucosyltransferase GI:453245 from [Manihot esculenta]
Length = 479
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 494 GINSTSHASWH---VVDWPVIIERARVVVGIDRARGVAVDLAMD 372
G NST + W V WP+ E+ + + G+AVDL MD
Sbjct: 369 GWNSTLESLWFGVPVATWPMYAEQQLNAFTLVKELGLAVDLRMD 412
>At5g23440.1 68418.m02750 ferredoxin-thioredoxin reductase, putative
similar to ferredoxin-thioredoxin reductase, variable
chain (FTR-V, Ferredoxin- thioredoxin reductase subunit
A, FTR-A) [Zea mays] SWISS-PROT:P80680
Length = 182
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 343 LRYPATVTCLSIARSTATPRALSMPTTTLA-LSIITGQS 456
+R P++ CLS + +TAT +++ + +A LS+ T QS
Sbjct: 15 IRRPSSHDCLSASATTATATPMALKSCIVAPLSLFTSQS 53
>At4g01090.1 68417.m00147 extra-large G-protein-related contains
weak similarity to extra-large G-protein [Arabidopsis
thaliana] gi|3201682|gb|AAC19353
Length = 714
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 369 PVHREIYG-YSPRPIYAHNYPRSLDYYRPIY 458
PVH + ++P P Y H YP + Y P++
Sbjct: 116 PVHLHGHANHNPGPSYYHQYPEPIQYPGPVH 146
>At3g54990.1 68416.m06102 AP2 domain-containing transcription
factor, putative similar to (SP:P47927) Floral homeotic
protein APETALA2, Arabidopsis thaliana, U12546
Length = 247
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 110 DIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRFGRHQSRGK 244
D D V + +RHD K + + + + LR S FGR S+ K
Sbjct: 172 DADINFVVDDYRHDIDKMKNLNKVEFVQTLRRESASFGRGSSKYK 216
>At3g44290.1 68416.m04756 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
NAC2 - Arabidopsis thaliana, EMBL:AF201456
Length = 335
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 512 CLVGVEGINSTSHASWHVVDWPVII 438
C +G+ I S + A W VV W +++
Sbjct: 302 CFIGIYSIKSINRARWDVVVWLLVM 326
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,964
Number of Sequences: 28952
Number of extensions: 320727
Number of successful extensions: 942
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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