Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b04r
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein L36|Schizosacc...    85   3e-18
SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein L36|Sch...    85   3e-18
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    27   0.74 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   0.74 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   0.98 
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   2.3  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    25   3.0  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   3.0  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   3.9  
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    25   3.9  
SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    25   3.9  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   3.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   9.1  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.1  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   9.1  

>SPCC970.05 |rpl3601|rpl36-1|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 99

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 44/86 (51%), Positives = 59/86 (68%)
 Frame = -2

Query: 276 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 97
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 96  RRLGTHIRAKRKREELSNVLAQMRKA 19
           +RLGT  RAK K EEL++V+   R A
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSRLA 98


>SPBC405.07 |rpl3602|rpl36-2, rpl36|60S ribosomal protein
           L36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 99

 Score = 85.0 bits (201), Expect = 3e-18
 Identities = 44/86 (51%), Positives = 59/86 (68%)
 Frame = -2

Query: 276 KGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLK 97
           K +T + +  RP+R KG  +K + FVR +VREV G A YE+R MEL++ S+DKRA K  K
Sbjct: 13  KTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAK 72

Query: 96  RRLGTHIRAKRKREELSNVLAQMRKA 19
           +RLGT  RAK K EEL++V+   R A
Sbjct: 73  KRLGTLKRAKGKIEELTSVIQSSRLA 98


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 1   VMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELQSTLV 123
           V SL G    L +  A+FFT PL ++VCA + +   +  ++
Sbjct: 545 VKSLNGEYIALEKIEAQFFTSPLVSNVCAYADVNHAKPVVI 585


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.5 bits (58), Expect = 0.74
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 180  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAK-RKREELSNVLAQMR 25
            ++ HA      ++ L+VSKD       KRR+ THI  +  +R  LS V  Q+R
Sbjct: 1119 LINHADILSSILDYLQVSKD-------KRRMATHILGQINQRLTLSQVRNQLR 1164


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 0.98
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = -1

Query: 190  STRSCRTRSI*EEGY---GVT*GVKRQACSEVLEATI 89
            +TR+C T+S+ EEG+    V+  +KR+  +++L+A I
Sbjct: 928  ATRACLTQSLEEEGFPSRNVSNEIKRRFLTDLLKARI 964


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = -2

Query: 192 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRL----GTHIRAKRK 61
           ++RE +G   + K  +     ++ K ALKF+ R+L      H+R +R+
Sbjct: 35  IIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVERE 82


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 13/39 (33%), Positives = 27/39 (69%)
 Frame = -2

Query: 144 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQM 28
           +LLK ++   + K  K+RL  +I  K K+EE+++++A++
Sbjct: 75  QLLKENEGSISSK-KKKRLDKYIENKLKKEEVASLIAKL 112


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -2

Query: 186 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           R+ +   +Y K A  L+K + ++R+++  ++R     +AKR   E +    Q  +   Q 
Sbjct: 303 RQAIWEKKYGKGANHLIKKATEERSIREERQRKYEERQAKRAARENAFTEHQTPQKPEQL 362

Query: 6   H 4
           H
Sbjct: 363 H 363


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
 Frame = -2

Query: 303 KTTKISAGRKGITDKAIRIR--PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKV 130
           K   ++  ++ + +  +R++  P  L+  Q   S+  R+L ++     Q EK+  EL++ 
Sbjct: 424 KQNVVNEAKRYLQETILRLQAIPYHLQVGQAWTSESERELEKK---KEQVEKKQEELMQT 480

Query: 129 SKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQAH 4
                   FL   +    +AKRK  E+  +L+ +     + H
Sbjct: 481 RIVLEEQVFLVENMIEDAKAKRKFSEVETLLSSLAPLHEEIH 522


>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +2

Query: 119 LSFDTLSNSIALFSY*ACPTTS 184
           +S+D+LS+ +++ S+  CP T+
Sbjct: 79  MSYDSLSDDVSVLSFLDCPLTT 100


>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 246 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 142
           RPA L+ L+T  SKFV  +    V    Y K  ++
Sbjct: 27  RPANLQFLKTNSSKFVPQVTAN-VSRRMYHKNVLD 60


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 131 TLSNSIALFSY*ACPTTSRTKSRTNLECF 217
           T+++S  LF+  A   T+ TKS  N+EC+
Sbjct: 850 TINHSRTLFATHAHQLTNLTKSFKNVECY 878


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 10  LGGCLPHLSEHVAKFFTLPLGA-DVCAQSSLQELQSTLVF*HLK*LHSPLLILS 168
           +GG +   SEHV K F L      V  ++   ++ S  +   LK + S LL ++
Sbjct: 127 IGGLIAEQSEHVEKAFNLLRQVLSVALKAQKPDMDSPELLEFLKPIQSELLTIT 180


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 75  GCVCPIVASRTSEHACLLT 131
           GCVCP++    SE A +L+
Sbjct: 189 GCVCPLLIDLESEDADVLS 207


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -2

Query: 309 GHKTTKISAGRKGITDKAIRIRPARLKGL------QTKHSKFV-RDLVREVVGHAQYEKR 151
           G+   K S      TDK   I+P  LKGL       TK ++ + RDL+R V+G    E +
Sbjct: 730 GNPVDKNSTSPSKSTDKLDPIKPVFLKGLFSVSTTSTKSTESIQRDLIR-VMGMLDIEYK 788

Query: 150 AME 142
            ++
Sbjct: 789 EIK 791


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,496,928
Number of Sequences: 5004
Number of extensions: 26629
Number of successful extensions: 77
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)