Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b04r
         (379 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)             125   1e-29
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.13 
SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)                   29   0.95 
SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.95 
SB_45611| Best HMM Match : p450 (HMM E-Value=0)                        28   2.2  
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)           27   3.8  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   3.8  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    27   3.8  
SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)                 27   5.1  
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   6.7  
SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)                   26   8.8  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   8.8  
SB_786| Best HMM Match : EGF (HMM E-Value=0)                           26   8.8  
SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   8.8  
SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)                       26   8.8  

>SB_35451| Best HMM Match : Ribosomal_L36e (HMM E-Value=0)
          Length = 100

 Score =  125 bits (302), Expect = 1e-29
 Identities = 64/110 (58%), Positives = 77/110 (70%)
 Frame = -2

Query: 330 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 151
           +AVGL+KGHK TK             + +P+R KG   K  KFVRD+VREVVG A YEKR
Sbjct: 1   MAVGLQKGHKVTK----------NVTKPKPSRRKGASNKRVKFVRDVVREVVGFAPYEKR 50

Query: 150 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQAHH 1
            MELL++ KDKRALKF K+RLGTH+R KRKREE+++VLA MRK   Q  H
Sbjct: 51  VMELLRIGKDKRALKFCKKRLGTHVRGKRKREEITSVLAAMRKQQQQQQH 100


>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
 Frame = -2

Query: 324  VGLRKGHKTT-----KISAGRKGITDKAIRIRPARLKGLQ----TKHS---KFVRDLVRE 181
            V  RKGHK T     +   G+KGI  K  R+  +R    Q     KHS   K +R  +RE
Sbjct: 1109 VSTRKGHKRTENYNDRKRDGKKGIDGKRERLSSSRSDDFQQSKMIKHSHLEKSLRQAMRE 1168

Query: 180  VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIR---AKRKREELSNVLAQMRKAAAQ 10
             + H+       E  KV K K+ ++F K + G  ++      KR+++  V++      +Q
Sbjct: 1169 -LEHSSENSSEEEKRKVRK-KKLVEF-KNKHGLDVKKMDESEKRKKVQQVMSMFNSTVSQ 1225


>SB_13913| Best HMM Match : WH2 (HMM E-Value=8.8e-05)
          Length = 493

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
 Frame = -2

Query: 351 IMAPRFEIAVGLRKGHKTTKISAGRKGITD---KAIRIRPARLKGLQTKHSKFVRDLVRE 181
           + AP+ E  V   K  K  K+S  ++ +     +AI    A LK  + K +  +R++++ 
Sbjct: 267 LSAPQNEEKVETPKSSKKEKLSELKRRLATPMREAIEAGIA-LKQTKKKLATPLREVIKS 325

Query: 180 VVGHAQYEKR-AMELLKVSKDKRALKFLKRRLGTHIRAK 67
                + +K+ A  L K  + K ALK  K+RL T IRA+
Sbjct: 326 KPKLKETKKKLATPLRKEIQSKPALKETKKRLATPIRAE 364


>SB_6230| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 29.5 bits (63), Expect = 0.95
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 231 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDK 118
           +GL+    K  + ++ E  GHA Y+K    L KVS+++
Sbjct: 32  RGLRKVSRKHAQRILDETAGHASYKKEHRGLRKVSREQ 69



 Score = 29.5 bits (63), Expect = 0.95
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 231 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 52
           +GL+    K  R ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   
Sbjct: 88  RGLRKVSRKHARRILDETAGHNTYKKEHRGLRKVSR-KHAQRILDGTAG-HCSYKKEHRG 145

Query: 51  L 49
           L
Sbjct: 146 L 146



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 231 KGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKR 58
           +GL+    +  + ++ E  GH  Y+K    L KVS+ K A + L    G +   K  R
Sbjct: 60  RGLRKVSREQAQRIIDETAGHGSYKKEYRGLRKVSR-KHARRILDETAGHNTYKKEHR 116



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 192 LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNV 40
           ++ E  GH  Y+K    L KVS+ K A + L    G H   K++   L  V
Sbjct: 17  ILNETAGHGSYKKEHRGLRKVSR-KHAQRILDETAG-HASYKKEHRGLRKV 65


>SB_45611| Best HMM Match : p450 (HMM E-Value=0)
          Length = 847

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -2

Query: 129 SKDKRALKFLKRRLGTHIRAKRKREELSN 43
           +K  RALKFLK RL   +R KR  E L N
Sbjct: 59  NKSPRALKFLKTRL-QDLRKKRDSETLRN 86


>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
          Length = 307

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 19/77 (24%), Positives = 36/77 (46%)
 Frame = -2

Query: 234 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKRE 55
           +K ++ +H   V  L +E    + Y     +L +  KDK  LK+ K      +R K++  
Sbjct: 140 IKSIKEQHDTEVEKLEKET---SDYLASLRQLKQELKDKE-LKYEKDMESLRVRCKKQAC 195

Query: 54  ELSNVLAQMRKAAAQAH 4
            +  + +++ KA  Q H
Sbjct: 196 SIKELKSELLKAQDQIH 212


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 246 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 115
           RP +L+ ++   + +VR L   + G  +Y +    L++ SKD R
Sbjct: 625 RPNKLQVIKLSDANYVRTLENSIQGGIEYLRLGDHLVEFSKDFR 668


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 87  PIVASRTSEHACLLTP*VTP*PSSHIERVRQLRVLNHGQTW 209
           P     +S  A L+     P PS ++   R+ R  NHG+TW
Sbjct: 772 PTERDYSSALAALMRKAKQPKPSPNLVHTRRERPRNHGRTW 812


>SB_14664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -2

Query: 186 REVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREE 52
           RE+    + + +  E++K+ K K++ K +K++     + K+K+EE
Sbjct: 3   REINQKDKKQIKKEEIIKIKKKKKSKKKIKKKKKKKKKKKKKKEE 47


>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
          Length = 922

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 267 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 109
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 659 TDKGLKVDPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKSCPQLSDITKPLRDL 712


>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 267 TDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQY-EKRAMELLKVSKDKRAL 109
           TDK +++ PA+++ +    S   +  V+ ++G AQY  K   +L  ++K  R L
Sbjct: 618 TDKGLKVNPAKVRAIVDMPSPTDKLGVQRLLGLAQYLAKFLPQLSDITKPLRDL 671


>SB_56590| Best HMM Match : Pox_A32 (HMM E-Value=6.1)
          Length = 740

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 30  SERARC*VLHASSWRGCVCPIVASRTSEHACLLT 131
           S   +C     S+W GC     AS T+ ++C LT
Sbjct: 233 STDTKCAKRCGSAWTGCAALSGASLTTSYSCALT 266


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 230 FSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 334
           FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 211 FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 245


>SB_786| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1427

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 192  LVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRK 61
            L R V+    Y+    +   + + ++ ++FL +RL   ++ KRK
Sbjct: 1235 LTRNVIYRNPYQPITYDYRTIGEQRQRVRFLAKRLSKILKRKRK 1278


>SB_39349| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1125

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 230  FSLAGLILMALSVIPLRPADILVVLWPFRRPTAIS 334
            FS A    + L+V+ +  + I+V LW  +RP A S
Sbjct: 954  FSFAFFYAIPLAVVIVLYSAIMVTLWMHKRPGAFS 988


>SB_36025| Best HMM Match : LHC (HMM E-Value=2.9)
          Length = 671

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 30  SERARC*VLHASSWRGCVCPIVASRTSEHACLLT 131
           S   +C     S+W GC     AS T+ ++C LT
Sbjct: 153 STDTKCAKRCGSAWTGCAALSGASLTTSYSCALT 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,889
Number of Sequences: 59808
Number of extensions: 218981
Number of successful extensions: 616
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 615
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)