Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b04r
         (379 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal prote...   109   6e-25
Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical pr...    29   0.83 
Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical pr...    29   0.83 
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical...    29   1.1  
AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical ...    28   1.9  
AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical ...    28   1.9  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    28   2.5  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical pr...    27   4.5  
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen...    27   4.5  
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st...    27   4.5  
AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical p...    26   7.8  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      26   7.8  
AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical...    26   7.8  

>U00033-6|AAC48295.2|  104|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 36 protein.
          Length = 104

 Score =  109 bits (262), Expect = 6e-25
 Identities = 56/104 (53%), Positives = 73/104 (70%)
 Frame = -2

Query: 330 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 151
           +AVGL KGH  T++           ++ R  R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9   LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58

Query: 150 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKA 19
            +E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+   RKA
Sbjct: 59  VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRKA 102


>Z81589-9|CAJ85769.1|  926|Caenorhabditis elegans Hypothetical
           protein T08G5.5b protein.
          Length = 926

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 246 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 109
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724


>Z81589-8|CAB04720.1|  923|Caenorhabditis elegans Hypothetical
           protein T08G5.5a protein.
          Length = 923

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 15/46 (32%), Positives = 28/46 (60%)
 Frame = -2

Query: 246 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 109
           R   LK L+  HS   + ++ ++  HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721


>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
           protein Y47D3A.26 protein.
          Length = 1205

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 249 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 115
           ++  ++  L T    +   L+REV G   Y++R  E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184


>AC006651-7|AAX22287.1|  786|Caenorhabditis elegans Hypothetical
           protein H06I04.3c protein.
          Length = 786

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -2

Query: 234 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 115
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>AC006651-6|AAF39868.1|  833|Caenorhabditis elegans Hypothetical
           protein H06I04.3a protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = -2

Query: 234 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 115
           L+  Q +HS+ VR++ +      + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 126 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM--RKAAAQAHH 1
           K+ R +KF   R L  H+R + K +ELS  +  M  R+ +A+  H
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNMVFRQLSAKIKH 251


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -2

Query: 240 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 67
           AR+K  + K  K + +  R+     +   +A E LK+ ++++  K L  +R+    +  K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594

Query: 66  RKREE 52
           RK EE
Sbjct: 595 RKAEE 599


>Z70680-8|CAA94570.2|  349|Caenorhabditis elegans Hypothetical
           protein C25G4.7 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 201 VRDLVREVVGHAQYEKRAMELLKV 130
           +RD + EV+G+ Q++K  +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156


>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
            protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 360  QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 193
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 192  LVREVVGHAQYE 157
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
            structural genes (yolk protein genes) protein 5 protein.
          Length = 1603

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 360  QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 193
            ++E++A R ++   LR+     H+  +++   K  + K   I         T+  KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185

Query: 192  LVREVVGHAQYE 157
            + RE  G  +YE
Sbjct: 1186 IEREYKGIPEYE 1197


>AF125959-1|AAD14733.1|  475|Caenorhabditis elegans Hypothetical
           protein H23N18.4 protein.
          Length = 475

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 192 LVREVVGHAQYEKRAMELLKV 130
           +V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 361 SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 188
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>Z81475-11|CAB03915.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 123 DKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           +KR  +  KR+L  HI  K K  E  NV  +M K   +A
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTKLIGEA 285


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -1

Query: 361 SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 188
           S RNHG  F N S     P NN N+    G   R S  +  + ++ SS  T+     FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471


>AL032627-23|CAA21551.1| 1820|Caenorhabditis elegans Hypothetical
           protein C24H11.7 protein.
          Length = 1820

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 123 DKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           +KR  +  KR+L  HI  K K  E  NV  +M K   +A
Sbjct: 249 EKRQKRKKKRQLSVHIETKAKEPE--NVPTEMTKLIGEA 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,324,028
Number of Sequences: 27780
Number of extensions: 151831
Number of successful extensions: 398
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)