Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b04r
         (379 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...   101   1e-22
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...   101   2e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)           100   3e-22
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    78   2e-15
At1g34590.1 68414.m04299 hypothetical protein                          29   0.78 
At3g56790.1 68416.m06316 RNA splicing factor-related contains we...    28   2.4  
At5g28430.1 68418.m03453 hypothetical protein                          27   4.1  
At4g27595.1 68417.m03964 protein transport protein-related low s...    27   4.1  
At4g06603.1 68417.m01028 expressed protein                             27   4.1  
At3g60930.1 68416.m06816 expressed protein                             27   4.1  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    26   7.2  
At4g35940.1 68417.m05113 expressed protein                             26   7.2  
At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containi...    26   7.2  
At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containi...    26   9.6  
At1g06440.1 68414.m00682 expressed protein                             26   9.6  

>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score =  101 bits (243), Expect = 1e-22
 Identities = 57/106 (53%), Positives = 68/106 (64%)
 Frame = -2

Query: 324 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 145
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 144 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR   A A
Sbjct: 58  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGA 103


>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score =  101 bits (242), Expect = 2e-22
 Identities = 55/106 (51%), Positives = 68/106 (64%)
 Frame = -2

Query: 324 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 145
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 144 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR     A
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGA 107


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score =  100 bits (240), Expect = 3e-22
 Identities = 56/106 (52%), Positives = 67/106 (63%)
 Frame = -2

Query: 324 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 145
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 144 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           ELLKV KDKRALK  KR+LGTH RAKRKREE+S+VL +MR     A
Sbjct: 62  ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAA 107


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 48/106 (45%), Positives = 62/106 (58%)
 Frame = -2

Query: 324 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 145
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 144 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 7
           ELLKV+         KR+LGTH RAKRKREE+S+VL +MR     A
Sbjct: 62  ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMRSGGGGA 98


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 29.5 bits (63), Expect = 0.78
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -2

Query: 375 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 235
           F+   + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
           similarity to U4/U6-associated RNA splicing factor [Homo
           sapiens] gi|2853287|gb|AAC09069
          Length = 206

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = -2

Query: 333 EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 163
           E+A+     HK TK    R  +  + I        L  L   ++K  +D+ + ++   Q 
Sbjct: 88  ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147

Query: 162 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 34
                  EK+   L +V+K+K   K +++ L    ++K K   L  VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196


>At5g28430.1 68418.m03453 hypothetical protein
          Length = 486

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 375 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 235
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477


>At4g27595.1 68417.m03964 protein transport protein-related low
            similarity to SP|P25386 Intracellular protein transport
            protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
 Frame = -2

Query: 276  KGITDKAIRIRPA----RLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 109
            KG  ++ +++R A    R++ L +K  + + D   + V H  YE +A E   + K +   
Sbjct: 1001 KGNENQELKVREASAAKRIEEL-SKMKESLLDKELQTVIHDNYELKAREASALKKIEELS 1059

Query: 108  KFLKRRLGTHIRAKRKREELSN 43
            K L+    TH     K EE++N
Sbjct: 1060 KLLEEASSTH----EKGEEITN 1077


>At4g06603.1 68417.m01028 expressed protein
          Length = 786

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 375 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 235
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777


>At3g60930.1 68416.m06816 expressed protein
          Length = 798

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 375 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 235
           F+   + ++ AP  E A     GH++ +  A   GITD+A  + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 28  HLSEHVAKFFTLPLGADVCAQSSLQELQS 114
           H+ EHVA   T  +G D C  S +Q + +
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At4g35940.1 68417.m05113 expressed protein
          Length = 451

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = -2

Query: 273 GITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR 94
           GI D+A+ +  + +KG++ K  K  R   R      + +K+  +  K  K+K+  +   +
Sbjct: 16  GIRDEAVIV--SSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGK 73

Query: 93  RLGTHIRA-KRKREE 52
            +G+  R+ KR+R+E
Sbjct: 74  EVGSEKRSHKRRRKE 88


>At2g29200.1 68415.m03549 pumilio/Puf RNA-binding domain-containing
           protein similar to BPM [Hordeum vulgare] GI:20513851
          Length = 968

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 145 GVT*GVKRQACSEVLEATIGHTHPRQEEA*RT*QRARSDE 26
           G+  G K+++ +++ +A +GH HP  ++  R   R   DE
Sbjct: 185 GLGLGGKQKSFADIFQADMGHGHPVAQQPSRPASRNTFDE 224


>At2g29190.1 68415.m03548 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 972

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 145 GVT*GVKRQACSEVLEATIGHTHPRQEEA*RT*QRARSDE 26
           G+  G K+++ +++ +A +GH HP  ++  R   R   DE
Sbjct: 193 GLGIGGKQKSFADIFQADMGHGHPVTKQPSRPASRNTFDE 232


>At1g06440.1 68414.m00682 expressed protein
          Length = 390

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 209 PSLSVI*YAKLSDTLNMRRGLWSYLR 132
           PSLS+   ++LS  L++ RG  S+LR
Sbjct: 69  PSLSIEFLSRLSQKLHLNRGAASFLR 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,987,516
Number of Sequences: 28952
Number of extensions: 145100
Number of successful extensions: 366
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)