Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b04f
         (426 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   2.9  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   6.6  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   6.6  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 136 PNSDGFVCDTLAASGYFSCFVAFSQAYCDFKTRGHD 29
           P  +G VC T+ A    +C   F    C+F   G+D
Sbjct: 346 PCQNGGVCTTIHAGHKCTCPEGFYGKNCEFS--GYD 379


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 153 VFKRNTPSLSVI*YAKLSDTLNMRRGLWSYLRC 251
           +F    P L+ I    +  TLN RR L   L+C
Sbjct: 19  IFTCVKPQLTRISDEAIESTLNDRRYLLRQLKC 51


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 400 IYHLMVMVMSLGGCLPHLSE 341
           +YH+  M  S  GC   ++E
Sbjct: 342 LYHISFMACSSAGCSQKVAE 361


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 422 FXKRKLVYLSLNGDGDEPGRLPSSS 348
           F +RK +   +N     P  LPS S
Sbjct: 181 FDRRKFISALVNAPSVSPASLPSIS 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,581
Number of Sequences: 336
Number of extensions: 1506
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9490410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)