Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b04f
(426 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 107 2e-24
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 29 1.1
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 29 1.1
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.4
AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 2.4
AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 2.4
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 4.3
Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.6
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 27 5.6
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 27 5.6
AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 7.4
Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical pr... 26 9.8
U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical pr... 26 9.8
AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein. 26 9.8
>U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 36 protein.
Length = 104
Score = 107 bits (258), Expect = 2e-24
Identities = 55/103 (53%), Positives = 72/103 (69%)
Frame = +2
Query: 50 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 229
+AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R
Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58
Query: 230 AMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRK 358
+E+L++SKDKRALKFLKRR+GTH RAK KREEL NV+ RK
Sbjct: 59 VLEMLRISKDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 134 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 271
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 724
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 134 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 271
R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL
Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQAL 721
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 131 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 265
++ ++ L T + L+REV G Y++R E LK+ K+ +
Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184
>AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical
protein H06I04.3c protein.
Length = 786
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +2
Query: 146 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 265
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical
protein H06I04.3a protein.
Length = 833
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +2
Query: 146 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 265
L+ Q +HS+ VR++ + + EK+ +EL++++K K+
Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 140 ARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFL--KRRLGTHIRAK 313
AR+K + K K + + R+ + +A E LK+ ++++ K L +R+ + K
Sbjct: 535 ARIKEEEEKQRKILEEEARKKQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIK 594
Query: 314 RKREE 328
RK EE
Sbjct: 595 RKAEE 599
>Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical
protein C25G4.7 protein.
Length = 349
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 179 VRDLVREVVGHAQYEKRAMELLKV 250
+RD + EV+G+ Q++K +E+L V
Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 20 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 187
++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 188 LVREVVGHAQYE 223
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 20 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 187
++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+
Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185
Query: 188 LVREVVGHAQYE 223
+ RE G +YE
Sbjct: 1186 IEREYKGIPEYE 1197
>AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical
protein H23N18.4 protein.
Length = 475
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +2
Query: 188 LVREVVGHAQYEKRAMELLKV 250
+V+++V + +YEK A ELL+V
Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454
>Z81523-4|CAB04243.1| 824|Caenorhabditis elegans Hypothetical
protein F32H2.3 protein.
Length = 824
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 192
S RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
>U50135-5|AAN63430.2| 346|Caenorhabditis elegans Hypothetical
protein C52E12.6 protein.
Length = 346
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 254 KDKRALKF-LKRRLGTHIRAKRKREELSNVLAQM 352
K+ R +KF R L H+R + K +ELS + M
Sbjct: 207 KECRGIKFRFNRELNEHVRLQHKSKELSCCVCNM 240
>AY340594-1|AAQ17186.1| 824|Caenorhabditis elegans SPD-2 protein.
Length = 824
Score = 26.2 bits (55), Expect = 9.8
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 19 SVRNHGPSF*NRSRPAKRPQNN*NIRWPQGYH-RQSHQN*AS*TKGSSNETLQVCP*FS 192
S RNHG F N S P NN N+ G R S + + ++ SS T+ FS
Sbjct: 413 SSRNHGGGFSNTSVSTVIPANNGNVSLSHGRDGRDSVSSVRTMSRASSTSTVYAGSTFS 471
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,580,375
Number of Sequences: 27780
Number of extensions: 158899
Number of successful extensions: 399
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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