Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b04f
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ... 100 4e-22
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A) 99 6e-22
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ... 100 8e-22
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ... 77 4e-15
At1g34590.1 68414.m04299 hypothetical protein 29 1.00
At3g56790.1 68416.m06316 RNA splicing factor-related contains we... 28 3.0
At5g28430.1 68418.m03453 hypothetical protein 27 5.3
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 5.3
At4g06603.1 68417.m01028 expressed protein 27 5.3
At3g60930.1 68416.m06816 expressed protein 27 5.3
At5g05440.1 68418.m00586 expressed protein low similarity to cyt... 26 9.3
At4g35940.1 68417.m05113 expressed protein 26 9.3
>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 112
Score = 100 bits (240), Expect = 4e-22
Identities = 54/100 (54%), Positives = 67/100 (67%)
Frame = +2
Query: 56 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
Length = 113
Score = 99 bits (238), Expect = 6e-22
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +2
Query: 56 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
VGL KGH T+ + + RP KG +K + F+R L+REV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61
Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 101
>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
ribosomal protein L36, Arabidopsis thaliana,
EMBL:AC004684
Length = 108
Score = 99.5 bits (237), Expect = 8e-22
Identities = 55/100 (55%), Positives = 66/100 (66%)
Frame = +2
Query: 56 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
VGL KGH TK + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 8 VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57
Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
ELLKV KDKRALK KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 58 ELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMR 97
>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
swissprot:Q92365
Length = 103
Score = 77.4 bits (182), Expect = 4e-15
Identities = 47/100 (47%), Positives = 61/100 (61%)
Frame = +2
Query: 56 VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 235
VGL KGH T+ + + RP KG +K + F+R+L++EV G A YEKR
Sbjct: 12 VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61
Query: 236 ELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 355
ELLKV+ KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 62 ELLKVA---------KRKLGTHKRAKRKREEMSSVLRKMR 92
>At1g34590.1 68414.m04299 hypothetical protein
Length = 820
Score = 29.5 bits (63), Expect = 1.00
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 5 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
F+ + ++ AP E A GH++ + A + G+TD+A + PA+
Sbjct: 765 FIAELKDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811
>At3g56790.1 68416.m06316 RNA splicing factor-related contains weak
similarity to U4/U6-associated RNA splicing factor [Homo
sapiens] gi|2853287|gb|AAC09069
Length = 206
Score = 27.9 bits (59), Expect = 3.0
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +2
Query: 47 EIAVGLRKGHKTTKISAGRKGITDKAIRI--RPARLKGLQTKHSKFVRDLVREVVGHAQ- 217
E+A+ HK TK R + + I L L ++K +D+ + ++ Q
Sbjct: 88 ELAIDTAVAHKQTKGFFLRVDVLGREIDEYGHVINLSTLMVNNNKHKKDVFQNILKPPQP 147
Query: 218 ------YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLA 346
EK+ L +V+K+K K +++ L ++K K L VLA
Sbjct: 148 FKLTKKEEKKLQTLRRVAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLA 196
>At5g28430.1 68418.m03453 hypothetical protein
Length = 486
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 5 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 431 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 477
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.1 bits (57), Expect = 5.3
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 104 KGITDKAIRIRPA----RLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRAL 271
KG ++ +++R A R++ L +K + + D + V H YE +A E + K +
Sbjct: 1001 KGNENQELKVREASAAKRIEEL-SKMKESLLDKELQTVIHDNYELKAREASALKKIEELS 1059
Query: 272 KFLKRRLGTHIRAKRKREELSN 337
K L+ TH K EE++N
Sbjct: 1060 KLLEEASSTH----EKGEEITN 1077
>At4g06603.1 68417.m01028 expressed protein
Length = 786
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 5 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 731 FMAELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 777
>At3g60930.1 68416.m06816 expressed protein
Length = 798
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 5 FLRIYQSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 145
F+ + ++ AP E A GH++ + A GITD+A + PA+
Sbjct: 743 FMSELKDDLKAPAPEPAPLSPGGHRSVESLADEAGITDQAGSLLPAK 789
>At5g05440.1 68418.m00586 expressed protein low similarity to
cytokinin-specific binding protein [Vigna radiata]
GI:4190976
Length = 203
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -3
Query: 352 HLSEHVAKFFTLPLGADVCAQSSLQELQS 266
H+ EHVA T +G D C S +Q + +
Sbjct: 40 HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68
>At4g35940.1 68417.m05113 expressed protein
Length = 451
Score = 26.2 bits (55), Expect = 9.3
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 107 GITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKR 286
GI D+A+ + + +KG++ K K R R + +K+ + K K+K+ + +
Sbjct: 16 GIRDEAVIV--SSIKGVEEKAKKEQRRKDRRSDKKDKKDKKERKEKKEKKEKKRKEREGK 73
Query: 287 RLGTHIRA-KRKREE 328
+G+ R+ KR+R+E
Sbjct: 74 EVGSEKRSHKRRRKE 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,229,476
Number of Sequences: 28952
Number of extensions: 151570
Number of successful extensions: 390
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -