Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03r
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    26   0.27 
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    26   0.27 
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.8  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  CSADTSRRPSDSAPANIP 1
           CSAD +R P    PAN+P
Sbjct: 167 CSADGTRIPGQLEPANVP 184


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 54  CSADTSRRPSDSAPANIP 1
           CSAD +R P    PAN+P
Sbjct: 174 CSADGTRIPGQLEPANVP 191


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 130 EQRKTDQKTVDEAVIKAIGARPDKK 56
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 130 EQRKTDQKTVDEAVIKAIGARPDKK 56
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKNDDSPALRALLTRPQAK 136


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 130 EQRKTDQKTVDEAVIKAIGARPDKK 56
           ++ K D+K  D   ++A+  RP  K
Sbjct: 112 DENKLDKKDDDSPALRALLTRPQAK 136


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,314
Number of Sequences: 336
Number of extensions: 4092
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)