Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b03r
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 113 1e-25
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 111 7e-25
02_02_0470 - 10700092-10700505 30 2.2
10_08_0951 - 21769342-21769752 29 5.1
10_08_0741 + 20235463-20235497,20237624-20237753,20238748-202389... 29 5.1
08_01_0897 - 8839134-8839718 28 6.7
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967... 28 8.8
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 28 8.8
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 8.8
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 113 bits (273), Expect = 1e-25
Identities = 78/176 (44%), Positives = 101/176 (57%), Gaps = 4/176 (2%)
Frame = -2
Query: 517 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 344
PT+ + +SS FS + + +R ++ GTV ILLAGR GKRVV + L SGLLLVT
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130
Query: 343 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDI 164
GPF N P+RR+ Q YVI TST++ + + K F+D YF EG ++
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKYF---SRDKKQKAKKTEG-EL 185
Query: 163 FATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
F T+KE K +P E +K DQK VD +IKAI A PD L+ YL A F LR P
Sbjct: 186 FETEKEATKNLP-EFKKEDQKVVDAELIKAIEAVPD---LKTYLGARFSLRDGDKP 237
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 111 bits (266), Expect = 7e-25
Identities = 81/196 (41%), Positives = 108/196 (55%), Gaps = 7/196 (3%)
Frame = -2
Query: 568 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 404
KNGGT K FYP + K RA S + + ++R + GTV ILLAGR
Sbjct: 31 KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87
Query: 403 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 224
+ GKRVV + L SGLLL+TGPF N P+RR+ Q YVI TST++ + K+ K F+D Y
Sbjct: 88 YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146
Query: 223 FXXXXXXXXXXXXXKEGDDIFATKKE--KYVPSEQRKTDQKTVDEAVIKAIGARPDKKVL 50
F EG ++F T+KE K +P + +K DQK VD +IKAI PD
Sbjct: 147 F---ARDKKAKAKKTEG-ELFETEKEATKNLP-DFKKDDQKAVDAELIKAIEVVPD---- 197
Query: 49 RGYLKAAFGLRSSQYP 2
LK+ G R+S++P
Sbjct: 198 ---LKSYLGARNSRWP 210
>02_02_0470 - 10700092-10700505
Length = 137
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 442 LKIGTVCILLAGRHAGKRVVLVGILPSG 359
LK G ILL GR+AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRYAGRKAVIVRVFEEG 32
>10_08_0951 - 21769342-21769752
Length = 136
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 442 LKIGTVCILLAGRHAGKRVVLVGILPSG 359
LK G ILL GR AG++ V+V + G
Sbjct: 5 LKPGKAVILLQGRFAGRKAVIVRVFEEG 32
>10_08_0741 +
20235463-20235497,20237624-20237753,20238748-20238915,
20239097-20239429,20239647-20239830,20239904-20240076
Length = 340
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 186 NAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL*SKPLEPDPTRRCSAD 43
NA+R M LPQ R F L + + ++ L K L DP+RR + D
Sbjct: 239 NARRYMKQLPQYPRQDFRL-RFRNMSAGAVDLLEKMLVFDPSRRITVD 285
>08_01_0897 - 8839134-8839718
Length = 194
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/53 (37%), Positives = 26/53 (49%)
Frame = +3
Query: 18 RSPKAALRYPRSTFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSP 176
R+ +AA+R +T S + AL A S S+L C DG S F SSP
Sbjct: 22 RAARAAVRIAATTTASSPSSPALAAALSRTP-SLLDCMDGDDDSIFYTPASSP 73
>08_02_1540 +
27694565-27694579,27696364-27696447,27696599-27696731,
27696840-27696951,27697530-27697629,27697810-27697937,
27698046-27698115,27698548-27698636,27698719-27698764,
27698854-27698924,27699002-27699075,27699341-27699433,
27699539-27699572,27699704-27699789,27702147-27702223,
27702445-27702533,27702630-27702813,27703068-27703249,
27703962-27704064,27704159-27704490,27704577-27705018,
27705749-27705846,27706988-27707081,27707666-27707787,
27708025-27708078,27708185-27708304,27708595-27708799,
27708889-27709059,27709155-27709310,27709375-27709431,
27709474-27709580,27709708-27709798,27709931-27710072,
27710149-27710305,27710400-27710516,27710596-27710722,
27710844-27711066,27711460-27711466,27711656-27711788
Length = 1574
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -1
Query: 578 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 480
W+ E Q+++P ++ L H+G+ C++WWP
Sbjct: 86 WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 306 FLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSASNVQSN 184
FL+ + PP + H C N S++I R + N QSN
Sbjct: 545 FLNLVAKFPPTKRHINAEACSNLSLLIDDMRRKLNLNEQSN 585
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 27.9 bits (59), Expect = 8.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3
Query: 267 HSATSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL* 88
HS+ + + S +TSR SA + KR S P K + S K +Q
Sbjct: 430 HSSDISSSSKSSEVTSRE--SAKVICEPVKRAQASPPLKHLSPIVEHSPKAKIKQD---- 483
Query: 87 SKPLEPDPTRRCSAD 43
+PL+PDP ++ D
Sbjct: 484 -EPLQPDPAKQAMED 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,914,409
Number of Sequences: 37544
Number of extensions: 479230
Number of successful extensions: 1246
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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