Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03r
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   135   4e-32
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.85 

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  135 bits (326), Expect = 4e-32
 Identities = 75/152 (49%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
 Frame = -2

Query: 454 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 278
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 277 TRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXKEGDDIFATKKEKYVPSEQRKTDQKTVD 98
            ++++   K+P+H ND+YF             K G +IFA+ K +Y  SEQRK D KTVD
Sbjct: 127 LKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEYTVSEQRKKDIKTVD 180

Query: 97  EAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
             ++ AI   P+ K L GYL   F L  +QYP
Sbjct: 181 APILAAIKKHPEHKFLFGYLGTRFSLGKNQYP 212



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 718 RNYDLGNGVMRFSKSKMFHKKAKYK 644
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 523 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 389
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,067
Number of Sequences: 27780
Number of extensions: 379799
Number of successful extensions: 1042
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)