Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b03r
(734 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 126 2e-29
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 126 2e-29
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 124 8e-29
At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DN... 30 1.4
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 30 1.8
At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containi... 30 1.8
At1g29790.1 68414.m03642 expressed protein 29 4.2
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 29 4.2
At2g27270.1 68415.m03277 expressed protein 28 5.6
At3g05050.1 68416.m00548 protein kinase family protein contains ... 28 7.4
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 28 7.4
At3g10440.1 68416.m01252 hypothetical protein 27 9.8
At3g08670.1 68416.m01007 expressed protein 27 9.8
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 126 bits (304), Expect = 2e-29
Identities = 88/239 (36%), Positives = 123/239 (51%)
Frame = -2
Query: 718 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 539
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 538 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 359
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 358 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXK 179
LLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172
Query: 178 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L+ P
Sbjct: 173 EGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGMKP 228
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 126 bits (304), Expect = 2e-29
Identities = 88/239 (36%), Positives = 123/239 (51%)
Frame = -2
Query: 718 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 539
RN DL GV ++S+S+M+HK+ + + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------DAPV 58
Query: 538 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 359
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 358 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXK 179
LLLVTGPF N PLRR+ Q YVIGTST++ + L K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF---GKVAEKKKKKT 172
Query: 178 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
EG+ A K+EK + +K DQK VD A+IKAI A P+ L+ YL A F L+ P
Sbjct: 173 EGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPE---LKTYLGARFSLKQGMKP 228
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 124 bits (298), Expect = 8e-29
Identities = 88/239 (36%), Positives = 121/239 (50%)
Frame = -2
Query: 718 RNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXKLTVVVKQIGGEKNGGTRTVPL 539
RN DL GV ++S+S+M+HK+ + V P+
Sbjct: 12 RNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------DAPV 58
Query: 538 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 359
++ FYP ++ ++ R K + ++ ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
Query: 358 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXK 179
LLLVTGPF N PLRR+ Q YVIGTST+I + K F+D YF
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF---GKVAEKKKKKT 172
Query: 178 EGDDIFATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSSQYP 2
EG+ A K+EK +++K DQKTVD A+IK+I A P+ KV YL A F L P
Sbjct: 173 EGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKV---YLGARFSLSQGMKP 228
>At3g23890.1 68416.m03002 DNA topoisomerase, ATP-hydrolyzing / DNA
topoisomerase II / DNA gyrase (TOP2) identical to
SP|P30182 DNA topoisomerase II (EC 5.99.1.3) {Arabidopsis
thaliana}
Length = 1473
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -2
Query: 160 ATKKEKYVPSEQRKTDQKTVDEAVIKAIGARPDKKVLRGYLKAAFGLRSS 11
ATK K P+ RK ++TV + AIG P+KKV R + F +SS
Sbjct: 1354 ATKAAK-PPAAPRKRGKQTVASTEVLAIGVSPEKKV-RKMRSSPFNKKSS 1401
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 544 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 455
P++RR+S P +E++ S GGR S H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555
>At1g78120.1 68414.m09104 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q99615 DnaJ homolog
subfamily C member 7 (Tetratricopeptide repeat protein
2) {Homo sapiens}; contains Pfam profile PF00515: TPR
Domain
Length = 530
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 210 RSASNVQSNAKRVMTS---LPQKKRNTFHLSSAKPIRRQSMRL*SKPLEPDPTRRCSADT 40
R+ N+ S + +T+ LP+K +T S++P + S + KP + R S+++
Sbjct: 41 RAKDNLSSKSSTTVTNPKILPRKSTDT----SSQPKKSDSQKPQQKPKPDENHPRKSSES 96
Query: 39 SRRPSDSAPANI 4
+R+ SDSA +I
Sbjct: 97 ARKSSDSARKSI 108
>At1g29790.1 68414.m03642 expressed protein
Length = 378
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 72 PDPTRRCSADTSRRPSDSAP 13
P P RRC + T R PSDS P
Sbjct: 145 PLPRRRCFSRTPRNPSDSKP 164
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 578 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 477
W+ E Q ++PQ V L H G+ C++WWPS
Sbjct: 96 WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131
>At2g27270.1 68415.m03277 expressed protein
Length = 231
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -2
Query: 517 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 338
PT++K A G SKH R + + + C+ GK ++ G+ + +LL+
Sbjct: 21 PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73
Query: 337 FAFNSCPLR-RIPQ 299
FAFN ++ R+P+
Sbjct: 74 FAFNYIAIQPRVPR 87
>At3g05050.1 68416.m00548 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 593
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -3
Query: 258 TSNCQNTSMMITSRRIRSASNVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQSMRL*SKP 79
T ++TS ++ + SASN + + + QKK N F ++ AK + + R SKP
Sbjct: 40 TETTESTSAVV----VASASNGEE-VRNHEDVVDQKKENGFVVTEAKERKSKGERKRSKP 94
Query: 78 LEPDPTR 58
PDP R
Sbjct: 95 --PDPRR 99
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 27.9 bits (59), Expect = 7.4
Identities = 25/93 (26%), Positives = 38/93 (40%)
Frame = -3
Query: 378 LEFCPAVCF*LLDLLHSIRARYAVFLSAM*SAPPPEFHSATSNCQNTSMMITSRRIRSAS 199
LE F LD+ + A V L S PP +S Q + + T + AS
Sbjct: 1053 LEHLSLAPFVELDMSKTGHASVQVSLGER-SWPPAAGYSFVCWFQFRNFLTTQGKESEAS 1111
Query: 198 NVQSNAKRVMTSLPQKKRNTFHLSSAKPIRRQS 100
++K MTS Q ++N F + S + +S
Sbjct: 1112 KAGGSSKTRMTSAQQHEQNIFRMFSVGAVSNES 1144
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = -3
Query: 264 SATSNCQNTSMMITSRRIRSASNVQSNAKRVMTS-----LPQKKRNTFHLSSAK-PIRRQ 103
S++S + S T +++ A ++ +A+ +T Q+ + L ++ P+RR+
Sbjct: 256 SSSSKTREASQTETLQKVVDAKEIKGDARFSLTKHSDWLKSQEPEPSESLYESRFPLRRR 315
Query: 102 SMRL*SKPLEPDPTRRCSADTSRR 31
S RL S+ EP + S +T++R
Sbjct: 316 SARLKSQEPEPSESFHDSIETTKR 339
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 51 STFLSGRAPMALITASSTVF*SVLRCSDGTYFSFFVAKMSSPS 179
S+F SGR+P +++ SS S +R S + S A+ S+P+
Sbjct: 168 SSFTSGRSPSSILNTSSASVSSYIRPSSPSSRSSSSARPSTPT 210
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,150
Number of Sequences: 28952
Number of extensions: 359703
Number of successful extensions: 967
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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