Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03f
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    88   4e-18
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    84   1e-16
02_02_0470 - 10700092-10700505                                         30   1.6  
10_08_0951 - 21769342-21769752                                         29   3.8  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    28   6.7  
01_06_0579 + 30379243-30379617                                         27   8.8  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 54/120 (45%), Positives = 70/120 (58%), Gaps = 5/120 (4%)
 Frame = +3

Query: 264 KNGGTRTVPLK----RRKSFYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGR 428
           KNGGT     K        FYP  + K RA S  +    +  ++R  +  GTV ILLAGR
Sbjct: 31  KNGGTFPKAGKPAAAAEPKFYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGR 87

Query: 429 HAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
           + GKRVV +  L SGLLL+TGPF  N  P+RR+ Q YVI TST++ +   K+ K F+D Y
Sbjct: 88  YMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISGVKVDK-FDDKY 146


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
 Frame = +3

Query: 315 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 488
           PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L SGLLLVT
Sbjct: 71  PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVT 130

Query: 489 GPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
           GPF  N  P+RR+ Q YVI TST++ +    + K F+D Y
Sbjct: 131 GPFKINGVPIRRVNQPYVIATSTKVDISGVNVEK-FDDKY 169


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 390 LKIGTVCILLAGRHAGKRVVLVGILPSG 473
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 390 LKIGTVCILLAGRHAGKRVVLVGILPSG 473
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>08_02_1540 +
           27694565-27694579,27696364-27696447,27696599-27696731,
           27696840-27696951,27697530-27697629,27697810-27697937,
           27698046-27698115,27698548-27698636,27698719-27698764,
           27698854-27698924,27699002-27699075,27699341-27699433,
           27699539-27699572,27699704-27699789,27702147-27702223,
           27702445-27702533,27702630-27702813,27703068-27703249,
           27703962-27704064,27704159-27704490,27704577-27705018,
           27705749-27705846,27706988-27707081,27707666-27707787,
           27708025-27708078,27708185-27708304,27708595-27708799,
           27708889-27709059,27709155-27709310,27709375-27709431,
           27709474-27709580,27709708-27709798,27709931-27710072,
           27710149-27710305,27710400-27710516,27710596-27710722,
           27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 254 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWP 352
           W+  E   Q+++P   ++  L  H+G+  C++WWP
Sbjct: 86  WKIPELHGQSNSPPLEQLFTLDEHTGKIRCVLWWP 120


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 313 TPLRRKSVPHLVAVHSASMYAGSD 384
           +P+RR S PH +A  S+ ++ G D
Sbjct: 17  SPMRRSSSPHRLASSSSDLHGGDD 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,239
Number of Sequences: 37544
Number of extensions: 383453
Number of successful extensions: 856
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)