Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03f
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               50   2e-06
SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                28   5.1  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)            28   6.8  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +3

Query: 492 PFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKH-FNDD 605
           PF  N  PLRRIPQ YVI TST I + + KLP+H F D+
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVKLPEHAFADE 40


>SB_48087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +2

Query: 275 NQNSTPQ---T*EVLLPHSGENPCLIWWPSIQQACTQDPTQP 391
           NQ++ PQ   T  VL+PH G  PC+  +P+         TQP
Sbjct: 94  NQSTLPQGNATQWVLIPHKGSMPCIGTFPNAINTWIIPGTQP 135


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
 Frame = +2

Query: 329 NPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCT----CWNSAQRSAFSYWTF 496
           NPC+   P+  + C Q   QP    C++S     C Q   T    C     +   +  T 
Sbjct: 14  NPCVQTAPTSTRVCKQHQHQPV---CVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 70

Query: 497 CIQFVPATPYSSALCDRHLHQ 559
               V   P S+ +C +H HQ
Sbjct: 71  INPCVQTAPTSTRVCKQHQHQ 91


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 383 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCIQFVPATPYS 529
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_28143| Best HMM Match : Neur_chan_memb (HMM E-Value=2.2)
          Length = 356

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 277 PEQYPSNVGSPSTPLRRKSVPHLVAVHSASMYAGSD 384
           P  Y ++ GSP+   +RK+ PH    HS+   A  D
Sbjct: 112 PMAYLTSTGSPNPQRKRKNDPHRTIDHSSVHRASRD 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,504,110
Number of Sequences: 59808
Number of extensions: 412994
Number of successful extensions: 1078
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)