Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03f
         (609 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p pro...   177   1e-44
AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-P...   177   1e-44
AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-P...   145   5e-35

>AY070994-1|AAL48616.1|  262|Drosophila melanogaster RE08669p
           protein.
          Length = 262

 Score =  177 bits (430), Expect = 1e-44
 Identities = 88/168 (52%), Positives = 112/168 (66%)
 Frame = +3

Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 284
           K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG KNGG RT
Sbjct: 19  KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78

Query: 285 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
           V LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL+ +L
Sbjct: 79  VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138

Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
            SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND Y
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAY 186


>AE014297-4764|AAF57167.1|  262|Drosophila melanogaster CG11522-PB,
           isoform B protein.
          Length = 262

 Score =  177 bits (430), Expect = 1e-44
 Identities = 88/168 (52%), Positives = 112/168 (66%)
 Frame = +3

Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 284
           K P N  L  G++R+SK++M+ ++A Y+                  VK+IGG KNGG RT
Sbjct: 19  KHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78

Query: 285 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
           V LK+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL+ +L
Sbjct: 79  VFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 138

Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
            SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND Y
Sbjct: 139 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAY 186


>AE014297-4763|AAF57166.1|  243|Drosophila melanogaster CG11522-PA,
           isoform A protein.
          Length = 243

 Score =  145 bits (351), Expect = 5e-35
 Identities = 79/168 (47%), Positives = 106/168 (63%)
 Frame = +3

Query: 105 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 284
           K P N  L  G++R+SK++M+ ++A Y+               + VV++           
Sbjct: 19  KHPVNSYLKGGILRYSKAQMYKRRALYRL----------KDKKSPVVEKA---------K 59

Query: 285 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 464
           VP+K+ K+ YPT+  ++       FS+H R  R NL  GTV ILLAGRH GKRVVL+ +L
Sbjct: 60  VPIKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVL 119

Query: 465 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY 608
            SGLLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG FK+P+H ND Y
Sbjct: 120 ASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAY 167


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,780,625
Number of Sequences: 53049
Number of extensions: 613961
Number of successful extensions: 1566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1566
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2503659279
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)