Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b03f
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    90   1e-18
Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.       27   7.9  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
 Frame = +3

Query: 378 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 554
           +R  L  GTV I+LAGRH GKRVV +  LP SGLLLVTGP   N  PLRRI Q +VI TS
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126

Query: 555 TRISLGNFKLPKHFNDDY 608
            ++++   K+P+H ND+Y
Sbjct: 127 LKVNVSGVKIPEHINDEY 144



 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 114 RNYDLGNGVMRFSKSKMFHKKAKYK 188
           RN+DL  GV+RFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36


>Z83102-9|CAI79156.1|   82|Caenorhabditis elegans Hypothetical
           protein C54C8.12 protein.
          Length = 82

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 309 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 443
           FYPT+   +A S G P +       PN ++  V    A RHAG R
Sbjct: 26  FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70


>Z47809-8|CAH10845.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z36719-11|CAH04695.1|  968|Caenorhabditis elegans Hypothetical
           protein C06C3.1d protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
           protein C06C3.1c protein.
          Length = 1124

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
           protein C06C3.1b protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
           protein C06C3.1a protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/57 (24%), Positives = 23/57 (40%)
 Frame = -3

Query: 523 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 353
           R    E+NA+      RP  +   S   L AC+     +   +   G  + TC ++G
Sbjct: 32  RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,278,133
Number of Sequences: 27780
Number of extensions: 298313
Number of successful extensions: 658
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)