Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b01r
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    34   0.091
At5g63450.1 68418.m07965 cytochrome P450, putative                     30   1.5  
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    30   1.5  
At3g48520.1 68416.m05296 cytochrome P450 family protein similar ...    30   2.0  
At4g39510.1 68417.m05587 cytochrome P450 family protein contains...    29   2.6  
At2g23240.2 68415.m02776 plant EC metallothionein-like family 15...    29   3.4  
At2g23240.1 68415.m02775 plant EC metallothionein-like family 15...    29   3.4  
At5g64820.1 68418.m08155 hypothetical protein                          29   4.5  
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-...    29   4.5  
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila...    29   4.5  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    28   6.0  
At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identica...    28   6.0  
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote...    28   7.9  
At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family pr...    28   7.9  

>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = +2

Query: 374 LPQSNELPADFRACFVLTVAEGKSAIVAV--------NIITQRQSETVALVHKLNGVFGE 529
           L  + +LP DF +C  + ++ G  A+  V        N + Q +S+  A+    NG    
Sbjct: 482 LSSTTDLPDDFLSCLGVALSPGNLAVALVRNFNVELLNPMYQARSQKAAVEFLWNGAQQS 541

Query: 530 DKSELNWETITDDVLG 577
            +SE + ET+T+ +LG
Sbjct: 542 GESEDSTETVTEAILG 557


>At5g63450.1 68418.m07965 cytochrome P450, putative
          Length = 510

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 427 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 308
           G+D TS  ++W F  L +N+ V  KIL+  RN+   LG+G
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNKG-SLGLG 344


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -3

Query: 373 NNKVYFKILNTERNQYLVLGVGTNPNGDHMAFGVNSVDSFRAQWYLQPAKYDKDNLFYIY 194
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D+D L  I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At3g48520.1 68416.m05296 cytochrome P450 family protein similar to
           Cytochrome P450 94A1  (P450-dependent fatty acid
           omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
           Pfam profile: PF00067 cytochrome P450
          Length = 506

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -3

Query: 427 GKDKTSPKVSWKFIALWENNKVYFKILNTERNQYLVLGVG 308
           G+D TS  ++W F  L EN+ V  KIL  E +  + LG+G
Sbjct: 304 GRDTTSAAMTWLFWLLTENDDVERKILE-EVDPLVSLGLG 342


>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
           Pfam PF00067: Cytochrome P450; similar to  Cytochrome
           P450 86A2 (SP:O23066) [Arabidopsis thaliana]
          Length = 508

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 481 LTLSNDVHGNDGRLAFG-DGKDKTSPKVSWKFIALWENNKVYFKI 350
           L  S+D    D  LAF   G+D TS  +SW F  L EN +V  KI
Sbjct: 293 LNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337


>At2g23240.2 68415.m02776 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 84

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 115 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 207
           HC   PC  P+ Q   T +K C C  GC C T
Sbjct: 51  HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 81


>At2g23240.1 68415.m02775 plant EC metallothionein-like family 15
           protein identical to EC protein homolog 2 (SP:Q42377)
           {Arabidopsis thaliana}; identical to an EST:
           GB:X92116:ATECPRHOM; contains a vertebrate
           metallothionein signature (PS00203); contains Pfam
           profile PF02068: Plant PEC family metallothionein
          Length = 85

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 115 HCIPRPCGYPRFQAS*TVSKPC-CIHGCRCRT 207
           HC   PC  P+ Q   T +K C C  GC C T
Sbjct: 52  HCGCNPCNCPKTQTQ-TSAKGCTCGEGCTCAT 82


>At5g64820.1 68418.m08155 hypothetical protein 
          Length = 145

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 413 CFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKSELNWETI 559
           C ++ +  G SA  A +    ++ E  ++V  ++G+FG      +WE I
Sbjct: 15  CIIIILISGVSADGAESDSAAKKEENPSIVKIISGIFGNKFPPSSWELI 63


>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
           RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain
          Length = 1226

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 278 EGHVVAVRVSTDSQYQILVTLSVQDLEVDLVVLPQSNELPADFRACFVLTVAEG-KSAIV 454
           +  + A   S   + + LV+ S +++  +L++LP  ++LPAD +A       +G +  IV
Sbjct: 747 QDEIEAACFSLKERMEQLVSSSSREI-TNLLILPIYSQLPADLQAKIFQKPEDGARKCIV 805

Query: 455 AVNI 466
           A NI
Sbjct: 806 ATNI 809


>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
           to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
           melanogaster and is a member of PF|00270 DEAD/DEAH box
           helicase family
          Length = 491

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = +2

Query: 359 VDLVVLPQSNELPADFRACFVLTVAEGKSAIVAVNIITQRQSETVALVHKLNGVFGEDKS 538
           VDLV+       P D+      T   G+  + AV+IIT+     V L+HK+    G+   
Sbjct: 371 VDLVINYDIPRDPRDYVHRVGRTARAGRGGL-AVSIITETD---VKLIHKIEEEVGKKME 426

Query: 539 ELNWETITDDV 571
             N + ITD +
Sbjct: 427 PYNKKVITDSL 437


>At5g03800.1 68418.m00347 exostosin family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles: PF03016 exostosin family,
           PF01535 PPR repeat
          Length = 1388

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 315 PNTKYWLRSVFKILK*TLLFSHRAMNFQLTFGLV 416
           PNT+Y L+ V + +K + LF H A    +T+G++
Sbjct: 806 PNTEYVLQEVDEFMKKSFLFHHSA-KLAVTYGIL 838


>At4g00730.1 68417.m00099 anthocyaninless2 (ANL2) nearly identical
           to Anthocyaninless2 [Arabidopsis thaliana] GI:5702094
          Length = 802

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 346 NTERNQYLVLGVGTNPNGDHMAF 278
           N   N  L L VGTN NG H AF
Sbjct: 270 NHHYNSSLELAVGTNNNGGHFAF 292


>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 625

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 509 LNGVFGEDKSELNWETITDDVLGALEPKLIGVLHAVHLVVSY 634
           L+G  G  +S LNWET  +  LGA   + I  LH+     S+
Sbjct: 427 LHGNKGSGRSPLNWETRANIALGA--ARAISYLHSRDATTSH 466


>At1g06550.1 68414.m00694 enoyl-CoA hydratase/isomerase family
           protein similar to CHY1 [gi:8572760]; contains Pfam
           profile PF00388 enoyl-CoA hydratase/isomerase family
           protein
          Length = 387

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
 Frame = -3

Query: 667 SEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCFPVEFRL---IFAENAIKLMYK 497
           +E IT V+  L R++    ++   Q   +G K  + DC   EFRL   I  +     MY 
Sbjct: 263 NEWITPVIKGLKRSSPTG-LKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPDMY- 320

Query: 496 RDGL-ALTLSNDVHGNDGRLAFGDGKDKTSPKVSWKFIALWENNKVYFKILNTERNQY 326
            +G+ ALT+  D           +  D+   K++  F  L+E++ +  +I  TE N++
Sbjct: 321 -EGIRALTIDKDNSPKWNPATLDEVDDE---KINSVF-KLFEDDDIELQIPETEENRW 373


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,372,798
Number of Sequences: 28952
Number of extensions: 309179
Number of successful extensions: 1064
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)