Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2DNL4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q4A0A1 Cluster: Putative transcriptional regulator; n=1...    33   9.5  
UniRef50_Q55GM7 Cluster: Putative uncharacterized protein; n=1; ...    33   9.5  

>UniRef50_A2DNL4 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 965

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
 Frame = -3

Query: 152 HFVGLCIVTLE-----IEFMFDVTCK-ICINETIPNVKLCS*NCLYHFLDNCQ 12
           +F+G+ I+T+      +EFMFD+ CK +  NET PN+   +   +  +L  C+
Sbjct: 133 YFLGMNIITVNESIAGVEFMFDLACKPLLNNETNPNILQVALEFMSTYLSYCK 185


>UniRef50_Q4A0A1 Cluster: Putative transcriptional regulator; n=1;
           Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305|Rep: Putative transcriptional regulator -
           Staphylococcus saprophyticus subsp. saprophyticus
           (strain ATCC 15305 /DSM 20229)
          Length = 690

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 351 QNAKLSWNILNLTCTNTQY-MLRLIHQYIHINIYPRHSILHFSRYFY 488
           + AK++ N + +   NT++ +L+ I +YIH NIY + S  + S+ FY
Sbjct: 127 KEAKVTLNTVYIPPLNTKHPLLQQITEYIHNNIYHKISTKNVSKAFY 173


>UniRef50_Q55GM7 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1807

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +1

Query: 115  SISSVTIHRPTKCFFFLFNKIYIHRCVEET*NFKRAETCKINFKICLQKTFIDKISKKNH 294
            S + V+  +P    FF   K  I + + +  N +  +   INFKIC+ +T I + SKKN 
Sbjct: 1338 SSTFVSFDKPDDYSFFNNKKAVIGKLLNDGINLEIFDQGVINFKICMSQT-ISRNSKKNP 1396

Query: 295  I 297
            I
Sbjct: 1397 I 1397


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,926,155
Number of Sequences: 1657284
Number of extensions: 11536371
Number of successful extensions: 23038
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23023
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)