Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.89 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   6.3  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.3  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 60  HIRNSFINTYFTRYIKHEFNLKCN 131
           H+R+  + T FTRY K EF L+C+
Sbjct: 429 HVRDR-LRTIFTRYFKGEFVLRCS 451


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 345  SHQNAKLSWNILNLTCTNTQYMLRLIH-QYIHINIYPRHSILHFSRYF---YNPVSTIP 509
            SH   KL W+  N +CT T  ML L    +  + ++ R+  +H+S  F   +N  S IP
Sbjct: 991  SHYRKKL-WDFYNFSCTITILMLLLAPLDFPVLIVWARNLSMHWSIPFPTHHNFFSIIP 1048


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 246 FKIYFTCFSPFKILSFFNTSMYVYFIK 166
           F + F C+  F +LSFFN    + + K
Sbjct: 210 FLVIFICYIFFTVLSFFNVPDAIVYSK 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,014
Number of Sequences: 5004
Number of extensions: 57104
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)