Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1205 + 35406456-35408072                                         28   6.6  
03_02_0522 + 9103357-9103437,9103538-9103592,9103687-9103739,910...    28   8.7  

>01_06_1205 + 35406456-35408072
          Length = 538

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 97  VTSNMNSISSVTIHRPTKCFFFLFNKIYI 183
           +T N+ S S V  H P  C F + N IYI
Sbjct: 373 LTGNLVSKSKVYSHAPLSCVFLVNNGIYI 401


>03_02_0522 +
           9103357-9103437,9103538-9103592,9103687-9103739,
           9103832-9104060,9104149-9104284,9104448-9104496,
           9105123-9105248,9106003-9106110,9106255-9106395
          Length = 325

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 104 DVTCKICINETIPNVKLCS*NCLYHFLDNC 15
           ++TC +C+ + +    L S  CL+ F  NC
Sbjct: 219 ELTCSVCLEQVVVGDLLRSLPCLHQFHANC 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,776,064
Number of Sequences: 37544
Number of extensions: 271990
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)