Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a24r
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy pro...    31   0.84 
AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical ...    31   0.84 
AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical ...    31   0.84 
Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>AM085500-1|CAJ30198.1|  947|Caenorhabditis elegans autophagy
           protein 9 protein.
          Length = 947

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 321 YKIKMKIISHQNAKLSWNILNLTCTNTQYMLRL-IHQYIHINIYPRHSILHFSRY 482
           Y  ++KI   Q   L+W+ +       Q  LRL IHQ    +IY  H IL +  Y
Sbjct: 252 YAHELKIADDQLPNLTWHAIVKRICEAQKKLRLSIHQDNITSIYIYHRILRYKNY 306


>AF101315-4|AAO25988.1|  719|Caenorhabditis elegans Hypothetical
           protein T22H9.2b protein.
          Length = 719

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 321 YKIKMKIISHQNAKLSWNILNLTCTNTQYMLRL-IHQYIHINIYPRHSILHFSRY 482
           Y  ++KI   Q   L+W+ +       Q  LRL IHQ    +IY  H IL +  Y
Sbjct: 252 YAHELKIADDQLPNLTWHAIVKRICEAQKKLRLSIHQDNITSIYIYHRILRYKNY 306


>AF101315-3|AAC69227.1|  880|Caenorhabditis elegans Hypothetical
           protein T22H9.2a protein.
          Length = 880

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 321 YKIKMKIISHQNAKLSWNILNLTCTNTQYMLRL-IHQYIHINIYPRHSILHFSRY 482
           Y  ++KI   Q   L+W+ +       Q  LRL IHQ    +IY  H IL +  Y
Sbjct: 252 YAHELKIADDQLPNLTWHAIVKRICEAQKKLRLSIHQDNITSIYIYHRILRYKNY 306


>Z81113-6|CAD21647.2|  295|Caenorhabditis elegans Hypothetical
           protein T03F6.6 protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 252 TNFKIYFTCFSPFKILSFFNTSMYVYF 172
           T + IY+T F  F I+ FF  S+  YF
Sbjct: 106 TMWLIYWTVFGAFSIIDFFAASIMSYF 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,964,471
Number of Sequences: 27780
Number of extensions: 317835
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)