Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a23f
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.8  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   2.4  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 401 VHQHRFGEVHPFPNWRRNSAG 339
           V+ H +   HP+PN+    AG
Sbjct: 168 VYTHHYARYHPYPNFGVPPAG 188


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 195 ALDELIQAVPRSRRPPLNSWIWTNAIEKMQIIDGHYKYFAEFARTQSRPGAV 350
           +L ++I+ V +   P L   +   A     +++ HY+ F  +   +  PG V
Sbjct: 369 SLKDVIEIVDKLLNPDLGLSLLQVAQIFKNLLENHYEEFVRYELGELAPGLV 420


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 514 VHTSVPPSCSMTRR*VTASPWLISSPSFFIEFVTDDLGSISTASVRS 374
           ++ +   S S +   VTA+P L  SP++    +    GS S+ ++ S
Sbjct: 161 INNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIAS 207


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -2

Query: 398 HQHRFGEVHPFPNW 357
           + HR  ++H  P W
Sbjct: 298 YHHRTADIHEMPQW 311


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -2

Query: 398 HQHRFGEVHPFPNW 357
           + HR  ++H  P W
Sbjct: 298 YHHRTADIHEMPQW 311


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -2

Query: 398 HQHRFGEVHPFPNW 357
           + HR  ++H  P W
Sbjct: 298 YHHRTADIHEMPQW 311


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -2

Query: 398 HQHRFGEVHPFPNW 357
           + HR  ++H  P W
Sbjct: 298 YHHRTADIHEMPQW 311


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 5/14 (35%), Positives = 8/14 (57%)
 Frame = -2

Query: 398 HQHRFGEVHPFPNW 357
           + HR  ++H  P W
Sbjct: 298 YHHRTADIHEMPQW 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,349
Number of Sequences: 336
Number of extensions: 2896
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)