Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a23f
(570 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 31 0.66
SB_10121| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.88
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2) 30 1.2
SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43) 30 1.5
SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23) 30 1.5
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18692| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22819| Best HMM Match : ROKNT (HMM E-Value=5.2) 29 2.7
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0) 28 4.7
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58) 28 4.7
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09) 28 6.2
SB_4258| Best HMM Match : Herpes_US9 (HMM E-Value=6.3) 28 6.2
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 27 8.2
SB_22904| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.03) 27 8.2
SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 8.2
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 161 RGRRRANKGFRGAGRVDSGRTEESTA--PAQLLDLDERYRENANHRRT 298
+G R +++GF +DSG+ + S A P L RY ++ NH T
Sbjct: 924 QGTRPSSEGFSSGDELDSGKGDSSIASSPYTSHTLGRRYNDHNNHSHT 971
>SB_10121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 30.7 bits (66), Expect = 0.88
Identities = 33/117 (28%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 EERVG--SDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRR 295
E+R G D T R R GR D RT + + DER N R
Sbjct: 71 EKRTGRNDDERTGRNDDERTGRNDDERTGRNDDERTGRNDEKRTGRNDDERTGRNDEKRT 130
Query: 296 TLQILCRV-REDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRG 463
R R D R +G + R+G + + DE TGR DE R G
Sbjct: 131 GRNDEKRTGRNDEERTGRNDDERTGRNDEERTGRNDEKRTGRNDDERTGRNDEKRTG 187
Score = 29.9 bits (64), Expect = 1.5
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 3/129 (2%)
Frame = +2
Query: 122 EERVG--SDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRR 295
EER G D T R R + GR D RT + + ++R N + R
Sbjct: 143 EERTGRNDDERTGRNDEERTGRNDEKRTGRNDDERTGRNDEKRTGRNDEKRTGRNDDERT 202
Query: 296 TLQILCRV-REDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHL 472
R R D R +G + R+G + + DE TGR DE R G +
Sbjct: 203 GRNDEERTGRNDDERTGRNDEERTGRNDDERTGRNDEERTGRNDDERTGRNDEERTGRNY 262
Query: 473 PPRHATGGR 499
R TG R
Sbjct: 263 EER--TGER 269
Score = 29.1 bits (62), Expect = 2.7
Identities = 32/117 (27%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 EERVG--SDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRR 295
E+R G D T R +R + GR D RT + + +ER N R
Sbjct: 111 EKRTGRNDDERTGRNDEKRTGRNDEKRTGRNDEERTGRNDDERTGRNDEERTGRNDEKRT 170
Query: 296 TLQILCRV-REDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRG 463
R R D R +G + R+G + + DE TGR DE R G
Sbjct: 171 GRNDDERTGRNDEKRTGRNDEKRTGRNDDERTGRNDEERTGRNDDERTGRNDEERTG 227
Score = 29.1 bits (62), Expect = 2.7
Identities = 33/117 (28%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Frame = +2
Query: 122 EERVGSDVE--TIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRR 295
E+R G + E T R R GR D RT + + DER N R
Sbjct: 127 EKRTGRNDEKRTGRNDEERTGRNDDERTGRNDEERTGRNDEKRTGRNDDERTGRNDEKRT 186
Query: 296 TLQILCRV-REDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRG 463
R R D R +G + R+G + + DE TGR DE R G
Sbjct: 187 GRNDEKRTGRNDDERTGRNDEERTGRNDDERTGRNDEERTGRNDDERTGRNDEERTG 243
>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
Length = 1716
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +2
Query: 122 EERVGSDVETIRFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDL-DERYRENANH 289
+ERVGSD++T+R R R + D+G TE T P QL ++ + +++ +A H
Sbjct: 283 QERVGSDIQTMRGRQPRAS----------DTGYTESRTGPEQLGNISNTQHKPSAPH 329
>SB_10883| Best HMM Match : ig (HMM E-Value=7.00649e-43)
Length = 1280
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 399 DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+PK +VT + +++ GE +T+ V + +GG VCT
Sbjct: 1004 NPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCT 1042
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 399 DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+P +VT + +++ GE +T+R V + +GG VCT
Sbjct: 306 NPTPNVTWTRSGKEDVLWTGETLTFRDVKISDGGCYVCT 344
>SB_43084| Best HMM Match : ig (HMM E-Value=9.7e-23)
Length = 960
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 399 DPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+PK +VT + +++ GE +T+ V + +GG VCT
Sbjct: 146 NPKPNVTWTRSGKKDVLGTGETLTFSNVKISDGGCYVCT 184
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +2
Query: 194 GAGRVDSGRTEESTAPAQLLDLDERYRENANHRRTLQILCRVRED-AVTARRCSGASSGM 370
G G +AP++ + + + RRT + V D +V A RC+G +SGM
Sbjct: 648 GGGGTAERLPPRQSAPSRFMAITSLLCGSTFERRTTVLSMGVVSDWSVPATRCAGTASGM 707
Query: 371 D 373
D
Sbjct: 708 D 708
>SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 262 RTLSRKCKSSTDITNTLPSSRGRSHGP 342
R KC+S+TD+T+ L S RG S P
Sbjct: 382 RLAYHKCQSNTDVTSRLRSCRGNSLEP 408
>SB_18692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 140 DVETIRFRGRRRANKGFRGAGRVDSGRTEE 229
D+E + RR N GF G G +DSG E+
Sbjct: 2 DLEELEKWIRRSRNNGFVGVGTIDSGEQEQ 31
>SB_22819| Best HMM Match : ROKNT (HMM E-Value=5.2)
Length = 50
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 140 DVETIRFRGRRRANKGFRGAGRVDSGRTEE 229
D+E + RR N GF G G +DSG E+
Sbjct: 2 DLEELEKWIRRSRNNGFVGVGTIDSGEQEQ 31
>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
Length = 734
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 230 STAPAQLLDLDERYRENANHRRTLQ 304
S A ++ DL+ER R+ A+HR+ L+
Sbjct: 475 SLAEGKIRDLEERLRDEAHHRKLLE 499
>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
Length = 429
Score = 28.3 bits (60), Expect = 4.7
Identities = 30/112 (26%), Positives = 42/112 (37%), Gaps = 4/112 (3%)
Frame = +2
Query: 161 RGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERY---RENANHRRTLQILCRVREDA 331
R R + G R + S ++ P + D R N+N R ++ +
Sbjct: 124 RPERSLSAGVRDIPQKQSTESKNIPGPTNSISSDSRRITKTTNSNSTRLIRTPGQSIHIK 183
Query: 332 VTARRCSGASSGMDGPHRSG-ADGPQVVCYELDEETGRADEPRRGCHLPPRH 484
V A C S+ +D P SG A P ET EPR+ LPP H
Sbjct: 184 VKAPHCENKSAPVDIPSFSGMAKSP---------ETASRREPRQRLKLPPLH 226
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 305 ILCRVREDAVTARRCSGASSGMDGP--HRSGADG--PQVVCYELDEETGRA 445
I C +T R CSG ++G GP + S +G Q + Y D +GRA
Sbjct: 333 ITCTSGTCDLTVRYCSGCAAGFTGPACNTSLGEGYWTQHIAYNQDAMSGRA 383
>SB_3165| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 221 TEESTAPAQLLDLDERYRENANHRRTLQILCR 316
T++++AP + DL R +NHR +CR
Sbjct: 998 TDDTSAPTHVQDLQAREEGGSNHRPEAPDICR 1029
>SB_2143| Best HMM Match : ig (HMM E-Value=1.9e-09)
Length = 306
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 375 DLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+LT + +P +VT + ++ GE +T+ V + +GG VCT
Sbjct: 138 ELTCSATGNPTPNVTWTRSGKENVLGTGETLTFSDVKISDGGCYVCT 184
>SB_4258| Best HMM Match : Herpes_US9 (HMM E-Value=6.3)
Length = 229
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 302 VMSVDDLHFLDSVRPNPRVERGPSTPRYGLNQLVQRHE 189
+ S+ H D R P +R PS PR+ +N+ + HE
Sbjct: 84 IRSLSMSHAYDHPR-KPAYDRPPSFPRFAVNRAYENHE 120
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 423 SMKKLGELMSHGEAVTYRLVMLQEGGTDVCTLQMS 527
SM ++ + G+ T+ +V L+EG T++C L ++
Sbjct: 56 SMVEVTSMDFKGDDSTHTIVSLREGATEMCALNLA 90
>SB_22904| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.03)
Length = 294
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 116 IVEERVGSDVETIRFRGRRRANKGFRGAGRVD 211
+ +E +G D+ET+R + RR +K + G +D
Sbjct: 66 LCKEELGKDIETVRAQLRRHQSKANKRKGLLD 97
>SB_22221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Frame = +3
Query: 144 WRQSDLGGDVELTKAFVALDELIQAVPRSRRP--------PLNSWIWTNAIEKMQIIDGH 299
WR L G +++ K+F+ L +P S+ P + +++W+N EK Q I H
Sbjct: 284 WRGLTLLGRIQVIKSFILPKILRNLIPLSKSPDYIKKINTSIFNFLWSNKPEKNQTI-SH 342
Query: 300 YKYF 311
K F
Sbjct: 343 NKRF 346
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 27.5 bits (58), Expect = 8.2
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +2
Query: 251 LDLDERYRENANHRRTLQILCRVREDAVTARRCSGASSGMDGPHRSGADGPQVVCYELDE 430
L L + +++ N +R L+ + R V + S SSG G S D + EL+E
Sbjct: 590 LQLLQERKKHDNTKRELEEVKSSRNSVVFSEYDS--SSGCSGFESSDTDAVAYLLRELEE 647
Query: 431 ETGRADEPR--RGCH 469
E R E R CH
Sbjct: 648 ERKRRQEAELARQCH 662
>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1347
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 260 DERYRENANHRRTLQILCRVREDAVTARRCSGASSGMDGPHRSGAD 397
+E+ + A RR L +CR R +V R+C A P G D
Sbjct: 361 EEKGPKKAERRRVLLAVCRRRSSSVPRRKCCKAGVVEPKPVVRGPD 406
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 365 GMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPR 481
G DGPH G DGP+ + EE G + RR PPR
Sbjct: 846 GPDGPHFGGPDGPR---FRGPEERGPGGQFRR--QGPPR 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,960,996
Number of Sequences: 59808
Number of extensions: 426712
Number of successful extensions: 1475
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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