Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a23f
(570 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical ... 28 4.1
Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical pr... 28 5.4
U50301-2|AAM29675.1| 362|Caenorhabditis elegans Hypothetical pr... 28 5.4
U39999-9|AAY44013.1| 122|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 24 6.2
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 27 9.5
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 27 9.5
>AF040655-7|AAB95044.2| 565|Caenorhabditis elegans Hypothetical
protein T24E12.9 protein.
Length = 565
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 449 EPRRGCHLPPRHATGGRHGCVHFA--DVPASIDLRHLQHHSP 568
EPRRG P HAT R+ C F D P L+ SP
Sbjct: 411 EPRRGVSSAPDHATSSRY-CHKFGRPDAPGPSTLKRQSKTSP 451
>Z70208-6|CAA94138.1| 183|Caenorhabditis elegans Hypothetical
protein F54B11.6 protein.
Length = 183
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = +3
Query: 258 WTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEA 389
W A ++ GH++ +F R + G P PV+ + T++
Sbjct: 138 WNTAYCSVECQQGHWQIHRKFCRRKKSNGGAPGPVQPIAEPTQS 181
>U50301-2|AAM29675.1| 362|Caenorhabditis elegans Hypothetical
protein F20D6.5 protein.
Length = 362
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -3
Query: 148 LHIGSDTF--LHNSSSKAYSFCRKSSTEH 68
L IG DTF LHN+ AY+F +K S ++
Sbjct: 62 LFIGDDTFCKLHNTEVDAYTFLQKFSDKN 90
>U39999-9|AAY44013.1| 122|Caenorhabditis elegans Hypothetical
protein F41G3.21 protein.
Length = 122
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 208 NSSSATKAFVSSTSPPKSDCLHIGSDTFLHNSSSKAYSFCRKS 80
NSSS+T VSST+ S C+ + + + ++ S+C S
Sbjct: 60 NSSSSTATSVSSTTSSSSTCVDLTNPRTGTSDCTRLASYCTNS 102
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 23.8 bits (49), Expect(2) = 6.2
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 347 CSGASSGMDGPHRSGADGPQVVCYELDEETGRADEPRRGCHLPPRHATGGRHG 505
CSG+ G G G G + GR G H RH GRHG
Sbjct: 294 CSGSPRGRHGHGGHGGHGSRS-----GSPGGRHGHGGSGHHRGGRHGGHGRHG 341
Score = 22.2 bits (45), Expect(2) = 6.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +2
Query: 479 RHATGGRHGCVH 514
RH GGRHG H
Sbjct: 350 RHGHGGRHGPPH 361
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 341 RRCSGASSGMDGPHRSGADGPQVVCYELDEE 433
++ SGA+ GMDG R+G+ ++VC E ++
Sbjct: 54 QQLSGAADGMDGSSRAGSQ--EIVCDEFTKK 82
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 342 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 506
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 315 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 366
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 342 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 506
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 289 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 340
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 342 GAVPAPVREWMDLTEAVLMDPKSSVTNSMKKLGELMSHGEAVTYRLVMLQEGGTD 506
G PAP++ +D+ +DPK K GEL ++ L+ L +G TD
Sbjct: 315 GNYPAPLKI-LDVVRTAYVDPKKGFEAEAKAFGELSQTFQSKA--LIGLFDGSTD 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,563,727
Number of Sequences: 27780
Number of extensions: 295047
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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