Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a23f
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   0.92 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    21   6.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.6  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   8.6  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 371 PFPNWRRNSAG 339
           P+PNW +N AG
Sbjct: 111 PYPNWAQNKAG 121


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 380 EVHPFPNWRRNSAGP*LRPRELGKVFVMSVDDLHFLDS 267
           ++ P+PNW  ++ G       + ++ V   D L  LDS
Sbjct: 227 KLRPYPNWEWHTVGNCDGLTSVFRIQVDECDRLWILDS 264


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 317 LGKVFVMSVDDLHFLDSVRPNPRVERGPSTPRYGLNQLV 201
           +G V  +SV        +RP    +  P T RYG + L+
Sbjct: 195 VGMVMYISVFKAEVGSKLRPRSSFQGPPFTYRYGFSFLL 233


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +3

Query: 243 LNSWIWTNAIEK 278
           +N+W+WT  IE+
Sbjct: 69  VNNWLWTPFIER 80


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 527 PASIDLRHLQHHSP 568
           PA+I + H  HH P
Sbjct: 454 PAAIQIGHTPHHHP 467


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/62 (17%), Positives = 26/62 (41%)
 Frame = +3

Query: 210 IQAVPRSRRPPLNSWIWTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEA 389
           +  +P+S + P +        + +  +     +FA   R  S  G + AP   +  + +A
Sbjct: 9   VSTMPKSLKEPCDGCAAPYGYKNIMTLSQDTSHFASLVRNASVSGNLDAPEGGFDAIMQA 68

Query: 390 VL 395
           ++
Sbjct: 69  IV 70


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 380 EVHPFPNWRRN 348
           +++P+PNW  N
Sbjct: 91  KLNPYPNWEMN 101


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  YALEDELWRNVSDPMWRQSDL 161
           YA+ +E WR V+D +    D+
Sbjct: 15  YAILNEAWRLVADGILNAKDV 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,860
Number of Sequences: 438
Number of extensions: 3534
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)