Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10a23f
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [... 30 0.95
At3g04740.1 68416.m00510 expressed protein (SWP1) 30 1.2
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 29 1.7
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 2.2
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 29 2.2
At3g11160.1 68416.m01353 expressed protein 29 2.9
At4g21060.1 68417.m03045 galactosyltransferase family protein co... 28 3.8
At3g14300.1 68416.m01809 pectinesterase family protein contains ... 28 3.8
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 28 3.8
At2g27210.1 68415.m03270 kelch repeat-containing serine/threonin... 27 8.8
At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa s... 27 8.8
At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa s... 27 8.8
At1g08420.1 68414.m00931 kelch repeat-containing protein / serin... 27 8.8
>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
[Lycopersicon esculentum] GI:5420276; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 461
Score = 30.3 bits (65), Expect = 0.95
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Frame = -3
Query: 463 ASPWLISSPSFFIEFVTDDLGSISTASVRSIHSRTGAGTAPGRDCVLANSAKYL*CPSMI 284
AS LI+S + T + G + A + AP + VL + S
Sbjct: 29 ASSKLITSSE--VAATTQNQGRVLRAKSKRTALDEKKANAPKKRAVLKDITNVTCENSYT 86
Query: 283 CIFSIAFVQIQELSGGRRLLGTA*INSSSATK----AFVSSTSPPKSDCLHIGSDTFLHN 116
FS+A I+++ GR+ ++ + SSSAT A V S L + +DT L
Sbjct: 87 SCFSVAVENIKQIKKGRQSSSSSKVASSSATSQVTDAKVEVVSNSAGASLSVFTDTSL-G 145
Query: 115 SSSKAYSFCRKSST 74
++ +YS K S+
Sbjct: 146 TNETSYSIIAKPSS 159
>At3g04740.1 68416.m00510 expressed protein (SWP1)
Length = 1703
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 450 SHGEAVTYRLVMLQEGGTDVCTLQMSPHQL 539
S G V R V+ E G D CT+ +SP QL
Sbjct: 1060 SFGSGVLARFVVEWESGKDGCTMHVSPDQL 1089
>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
family protein similar to SP|P50532 Chromosome assembly
protein XCAP-C {Xenopus laevis}; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 141 MWRQSDLGGDVELTKAFVALDELIQAVPRSRRPPLNSW 254
M++ LGGD EL + +LD + V S RPP SW
Sbjct: 1100 MYQMITLGGDAEL-ELVDSLDPFSEGVVFSVRPPKKSW 1136
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 IWTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEAVL-MDPKSSVTNSMK 431
+W++A I++GH + A S D T + DP SV ++ K
Sbjct: 135 VWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTK 194
Query: 432 KLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+ G + + V Q+ G VC+
Sbjct: 195 VRAYKILRGHKASVQSVSAQKSGNMVCS 222
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 29.1 bits (62), Expect = 2.2
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 IWTNAIEKMQIIDGHYKYFAEFARTQSRPGAVPAPVREWMDLTEAVL-MDPKSSVTNSMK 431
+W++A I++GH + A S D T + DP SV ++ K
Sbjct: 135 VWSSAGSCSHILEGHSGAISSVALVNSNDAETVTVATASKDRTLRLFKFDPAESVDSTTK 194
Query: 432 KLGELMSHGEAVTYRLVMLQEGGTDVCT 515
+ G + + V Q+ G VC+
Sbjct: 195 VRAYKILRGHKASVQSVSAQKSGNMVCS 222
>At3g11160.1 68416.m01353 expressed protein
Length = 145
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +3
Query: 81 DLRQKLYA-LEDELWRNVSDPMWRQSDL 161
DLR+K++ L+D+ W ++ MW +SD+
Sbjct: 69 DLRKKMWPELKDKEWFRITSRMWSESDI 96
>At4g21060.1 68417.m03045 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 741
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 218 RTEESTAPAQLLDLDERYRENANHRRTLQILCRVREDAVTARRCSGASSGMD 373
+T + P ++L L+ R + + NHR ++ R A+RC G S D
Sbjct: 302 KTGDGEYPPKILHLNPRIKGDWNHRPVIEHNTCYRMQWGVAQRCDGTPSKKD 353
>At3g14300.1 68416.m01809 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 968
Score = 28.3 bits (60), Expect = 3.8
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = -2
Query: 506 IRASLL*HDEAVSDSLAVAHQLAQFLHRVRNRRLGVHQHRFGEVHPFPNWRRNSAGP*LR 327
++++++ E S+SLA+ +AQ L + R+ V R + FPNW R L+
Sbjct: 597 LKSAMVNSTEFTSNSLAI---VAQVLKKPSKSRIPVQGRRLLNSNSFPNWVRPGVRRLLQ 653
Query: 326 PRELGKVFVMSVD 288
+ L ++ D
Sbjct: 654 AKNLTPHVTVAAD 666
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 275 LDSVRPNPRVERGPSTPRYGLNQLVQ 198
++SV+PN R RGPS R + +L +
Sbjct: 307 IESVKPNSRTSRGPSPSRVAVVELTK 332
>At2g27210.1 68415.m03270 kelch repeat-containing serine/threonine
phosphoesterase family protein similar to SP|P48482
Serine/threonine protein phosphatase PP1 isozyme 2 (EC
3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile
PF00149: Calcineurin-like phosphoesterase
Length = 1006
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = -2
Query: 299 MSVDDLHFLDSVRPNPR----VERGPST-PRYG 216
+S +DLH LD + PR V +GP PRYG
Sbjct: 200 LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYG 232
>At1g79010.1 68414.m09213 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial (TYKY) identical to SP|Q42599
NADH-ubiquinone oxidoreductase 23 kDa subunit,
mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
(Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}
Length = 222
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 155 RFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRRT 298
RFRG + G R + + E+ PAQ + ++ RE+ + R T
Sbjct: 106 RFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTT 153
>At1g16700.1 68414.m02000 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial, putative very strong similarity
to SP|Q42599 NADH-ubiquinone oxidoreductase 23 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-23KD) (CI-23KD) (Complex I- 28.5KD)
(CI-28.5KD) {Arabidopsis thaliana}; contains Pfam
profile PF00037: iron-sulfur cluster-binding protein
Length = 222
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 155 RFRGRRRANKGFRGAGRVDSGRTEESTAPAQLLDLDERYRENANHRRT 298
RFRG + G R + + E+ PAQ + ++ RE+ + R T
Sbjct: 106 RFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTT 153
>At1g08420.1 68414.m00931 kelch repeat-containing protein /
serine/threonine phosphoesterase family protein contains
Pfam profiles: PF00149 calcineurin-like phosphoesterase,
PF01344 kelch motif
Length = 1018
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = -2
Query: 299 MSVDDLHFLDSVRPNPR----VERGPST-PRYG 216
+S +DLH LD + PR V +GP PRYG
Sbjct: 211 LSAEDLHVLDLTQQRPRWHRVVVQGPGPGPRYG 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,992,488
Number of Sequences: 28952
Number of extensions: 284914
Number of successful extensions: 944
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -