Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a21r
         (533 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0U2N0 Cluster: Predicted protein; n=1; Phaeosphaeria n...    34   1.8  
UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus agglu...    32   7.2  
UniRef50_Q9MAS8 Cluster: F13M7.22 protein; n=2; Arabidopsis thal...    32   9.5  
UniRef50_O80469 Cluster: Putative uncharacterized protein At2g23...    32   9.5  
UniRef50_Q5K039 Cluster: Phytochrome; n=4; Trichocomaceae|Rep: P...    32   9.5  

>UniRef50_Q0U2N0 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 607

 Score = 34.3 bits (75), Expect = 1.8
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 458 SERGSGGDAADSAPRVTRAPTITASRVRDHVSS 360
           S+RG G DA D+ PR  +AP IT  R R   S+
Sbjct: 353 SKRGKGKDATDANPRPIKAPRITGRRTRARSSA 385


>UniRef50_UPI0000E478F5 Cluster: PREDICTED: similar to plus
           agglutinin; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to plus agglutinin -
           Strongylocentrotus purpuratus
          Length = 2710

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = -1

Query: 473 RTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNNTS 294
           + LP+  +   G+   S P + + P +T    +D VSS  V    SV+S  V+ TT+NTS
Sbjct: 814 KRLPSQTQTLPGNNG-SVPALVQHPQLTQQNFQDSVSSAAV----SVQSTSVLSTTSNTS 868

Query: 293 MI 288
            +
Sbjct: 869 SL 870


>UniRef50_Q9MAS8 Cluster: F13M7.22 protein; n=2; Arabidopsis
           thaliana|Rep: F13M7.22 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 716

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = -1

Query: 500 AKVNLSCPRRTLPTSERGSGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQ 321
           A V  +  RRT+   ++G        APRV + P +  ++   HV  +    Y     ++
Sbjct: 76  ASVGNALFRRTVVEKDKGKSISTDPCAPRVEKNPVLNLNQRNGHV-HVAASRYQPSEDIR 134

Query: 320 VMRTTNNTSMILRSFKSYNLLFNYN 246
            +RT+N  S +     S+ L  N N
Sbjct: 135 ELRTSNGCSPLRGDHNSFVLPGNSN 159


>UniRef50_O80469 Cluster: Putative uncharacterized protein
           At2g23530; n=2; Arabidopsis thaliana|Rep: Putative
           uncharacterized protein At2g23530 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 555

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 355 NKLET*SRTRLAVIVGARVTRGAESAASPPEPRSLVGRVRR 477
           + LET       ++V ARVTR    AA  P P S+ GR+R+
Sbjct: 511 SNLETRLGESQTLVVKARVTRSKRKAALEPNPDSIGGRLRQ 551


>UniRef50_Q5K039 Cluster: Phytochrome; n=4; Trichocomaceae|Rep:
            Phytochrome - Emericella nidulans (Aspergillus nidulans)
          Length = 1280

 Score = 31.9 bits (69), Expect = 9.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -2

Query: 517  LPRPPEPKSTSPARGAPCRLANEALAETRRTQLRASLGLQQ*QQAECA 374
            +PR  EP+ T+PA GA  + + E+ A+TR  +   S      +Q+E A
Sbjct: 1063 VPRKSEPEDTAPADGAGEQASGESEAQTRPKKTGESTASTSHEQSETA 1110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,627,857
Number of Sequences: 1657284
Number of extensions: 6598641
Number of successful extensions: 21415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21383
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 33739557507
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)