Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10a21r
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290     29   3.1  
01_02_0086 - 10979236-10979396,10980288-10980798,10984446-109849...    28   4.1  
02_05_0717 + 31190626-31191234,31191954-31192394,31192699-311928...    28   5.4  
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859...    27   7.2  
04_04_0176 - 23329589-23331043                                         27   7.2  
09_04_0392 + 17251536-17252336                                         27   9.5  
04_04_0958 - 29690164-29690622                                         27   9.5  

>03_06_0458 - 34077649-34077849,34077956-34078127,34078803-34079290
          Length = 286

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/49 (34%), Positives = 31/49 (63%)
 Frame = -1

Query: 446 SGGDAADSAPRVTRAPTITASRVRDHVSSLLVIFYVSVRSVQVMRTTNN 300
           + G+AA +A + TRA  ++ S +R H SSL+++  + + ++ V  TT N
Sbjct: 31  AAGEAA-AAKKATRAWGVSVS-LRSHFSSLVLLLLLLLVALAVSATTKN 77


>01_02_0086 -
           10979236-10979396,10980288-10980798,10984446-10984977,
           10984983-10985002
          Length = 407

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 514 PRPPEPKSTSPARGAPCRLANE--ALAETRRTQLRASLGLQQ 395
           PRPP P S SP   A  +L +E   LA  +R ++     L++
Sbjct: 284 PRPPRPPSASPLDAADQKLISELSELASLKRARIERMKALKK 325


>02_05_0717 +
           31190626-31191234,31191954-31192394,31192699-31192802,
           31193000-31194384,31194508-31194548,31195065-31195133,
           31195335-31195435,31195747-31195825,31195939-31196037,
           31196119-31196187,31197609-31197658,31197749-31197925,
           31198045-31198152,31198224-31198290
          Length = 1132

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 514 PRPPEPKSTSPARGAPCRLANEALAETRRTQLRASLGLQQ*QQAE 380
           P+PP P + S A G+P   +  + AE RR  + A     Q ++ E
Sbjct: 64  PQPPTPSTPSEAEGSPFSSSVGSGAEERRQSVAAERRRSQEEEWE 108


>09_04_0284 +
           16384553-16384755,16384884-16385199,16385889-16385971,
           16386802-16386849,16387701-16387965,16388058-16388189,
           16388313-16388448,16388557-16388594
          Length = 406

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 520 ALPRPPEPKSTSPARGAPCRLANEALAETRRTQLRAS 410
           A P PP P  T P RGA    A+ +  E + ++L A+
Sbjct: 115 APPNPPNPPLTHPRRGAFAGFADMSWEEFQASRLGAA 151


>04_04_0176 - 23329589-23331043
          Length = 484

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 491 NLSCPRRTLPTSERGSGGDAADSAPRVTR 405
           +LSCP   LP    G G D    APR  R
Sbjct: 198 SLSCPPTLLPLGGGGGGDDPHVHAPRAAR 226


>09_04_0392 + 17251536-17252336
          Length = 266

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 500 AKVNLSCPRRT-LPTSERGSGGDAADSAPRVTRAPTITAS 384
           AK+N  C     +P+   G+GGDA  +A       T T S
Sbjct: 173 AKLNFPCSEPLPMPSQRNGNGGDAVTAATTTAEQMTPTLS 212


>04_04_0958 - 29690164-29690622
          Length = 152

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 520 ALPRPPEPKSTSPARGAP--CRLANEALAETRRT 425
           +LP PPEP    P   +P  CR  ++A    RRT
Sbjct: 35  SLPPPPEPVPVFPRSVSPYVCRRKSDASGARRRT 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,587
Number of Sequences: 37544
Number of extensions: 175673
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)